| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,765,794 | (C)7→6 | intergenic (‑18/‑124) | yfjM ← / → rnlA | CP4‑57 prophage; protein YfjM/CP4‑57 prophage; RNase LS, toxin of the RnlAB toxin‑antitoxin system |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,765,788 | 0 | C | . | 99.3% | 596.7 / ‑2.6 | 142 | intergenic (‑12/‑130) | yfjM/rnlA | CP4‑57 prophage; protein YfjM/CP4‑57 prophage; RNase LS, toxin of the RnlAB toxin‑antitoxin system |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base . (48/93); total (49/93) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.31e-01 | |||||||||||
Only 100 of 163 total aligned reads displayed.
GGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAAT > NC_000913/2765650‑2765919 | ggCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGcc < 1:1675132/140‑1 (MQ=255)ggCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGcc > 2:205589/1‑140 (MQ=255) gCTCTCTGCTCGTTCTGTTTCGACGAAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGccc > 2:1369594/1‑140 (MQ=255) ctctctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGcccc < 1:1555962/140‑1 (MQ=255) tctctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGccccc < 1:822942/140‑1 (MQ=255) tctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGTACATCATCCCCCATTTTGTGGACTGccacccg > 2:1180571/1‑139 (MQ=255) tctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGccccccg > 1:96729/1‑139 (MQ=255) tctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGccccccg > 2:1640018/1‑139 (MQ=255) tctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGccccccg < 2:144398/140‑2 (MQ=255) tctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGcccc < 1:746225/137‑1 (MQ=255) tctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGcccc > 2:746225/1‑137 (MQ=255) tCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGa < 2:1221197/140‑1 (MQ=255) tCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGa < 2:139796/140‑1 (MQ=255) tCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGa < 1:337885/140‑1 (MQ=255) cTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATc < 1:589289/140‑1 (MQ=255) cTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATc < 1:1397069/140‑1 (MQ=255) cTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATc < 1:1425908/140‑1 (MQ=255) cTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATc < 1:615614/140‑1 (MQ=255) cTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATc < 2:441502/140‑1 (MQ=255) cTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATc < 1:1586175/140‑1 (MQ=255) cTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑CGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATc < 1:1311270/140‑1 (MQ=255) gTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCt > 1:1724353/1‑140 (MQ=255) gTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCt > 2:423467/1‑140 (MQ=255) tttCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTg < 1:181341/140‑1 (MQ=255) ttCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGccccc < 1:1171218/124‑1 (MQ=255) ttCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGccccc > 2:1171218/1‑124 (MQ=255) tCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGcc < 2:1612565/140‑1 (MQ=255) cGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGccc < 2:498995/140‑1 (MQ=255) cGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGccc < 2:114043/140‑1 (MQ=255) cGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGccc < 2:1176419/140‑1 (MQ=255) aCGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGcc < 2:1327311/140‑1 (MQ=255) ttttCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGt < 2:1773777/140‑1 (MQ=255) ttttCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGt < 2:1417295/140‑1 (MQ=255) ttttCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGt < 1:423467/140‑1 (MQ=255) tCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑cc < 1:1177276/140‑1 (MQ=255) tCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑cc < 1:265222/140‑1 (MQ=255) cTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑ccc > 1:748329/1‑140 (MQ=255) tgctgGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAg > 2:135708/1‑129 (MQ=255) tgctgGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAg < 1:135708/129‑1 (MQ=255) gAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTgg < 1:658618/140‑1 (MQ=255) aataatTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGc > 2:904872/1‑140 (MQ=255) tAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAg < 1:662319/140‑1 (MQ=255) tAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAg < 2:1724353/140‑1 (MQ=255) tAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAg < 2:748329/140‑1 (MQ=255) tAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAg < 1:969670/140‑1 (MQ=255) aGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAGATTTAGCa > 2:132108/1‑140 (MQ=255) gTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCaa < 1:1624543/140‑1 (MQ=255) tATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCaaa > 1:1659733/1‑140 (MQ=255) tCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAAt > 2:981158/1‑140 (MQ=255) tCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCa < 1:1310272/136‑1 (MQ=255) cGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCTCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCa > 2:596731/1‑140 (MQ=255) cGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAATG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCa > 1:41457/1‑140 (MQ=255) aGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAAt > 2:111517/1‑140 (MQ=255) gTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATa < 1:1608072/140‑1 (MQ=255) gctgct‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATacac > 2:760826/1‑140 (MQ=255) ctgct‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAg > 1:1394106/1‑126 (MQ=255) ctgct‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAg < 2:1394106/126‑1 (MQ=255) ctgct‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAg > 1:785298/1‑126 (MQ=255) ctgct‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACt > 1:1667452/1‑140 (MQ=255) ctgct‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACt > 2:1532561/1‑140 (MQ=255) ctgct‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACt > 1:521035/1‑140 (MQ=255) ctgct‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACt > 2:1741764/1‑140 (MQ=255) ctgct‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACt > 2:688308/1‑140 (MQ=255) ctgct‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACt > 2:1035614/1‑140 (MQ=255) ctgct‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTA‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACt > 2:822654/1‑140 (MQ=255) t‑‑‑tGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAg < 1:205589/140‑1 (MQ=255) t‑‑‑tGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAg < 1:46623/140‑1 (MQ=255) t‑‑‑tGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAg < 2:611238/140‑1 (MQ=255) t‑‑‑tGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAg < 2:301995/140‑1 (MQ=255) t‑‑‑tGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAg < 2:1667452/140‑1 (MQ=255) ggTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCTCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAggg < 1:596731/140‑1 (MQ=255) gagaTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAgggggg < 2:473686/140‑1 (MQ=255) gaTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGta < 2:1258373/140‑1 (MQ=255) gaTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGta < 1:1369594/140‑1 (MQ=255) gaTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGta < 2:941258/140‑1 (MQ=255) aTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGtat > 1:1487717/1‑140 (MQ=255) aaGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGt < 1:599119/140‑1 (MQ=255) agGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTaga < 1:228227/140‑1 (MQ=255) gTTTCCGAAACGATGGACATCATCCCCCATCTTGTGGACTG‑CCTCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGt < 2:781516/140‑1 (MQ=255) gTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGt < 2:1487717/140‑1 (MQ=255) gTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGt < 2:642526/140‑1 (MQ=255) gTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGt > 2:704096/1‑140 (MQ=255) gTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGtt > 2:1810508/1‑140 (MQ=255) tACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGttt > 2:1014371/1‑140 (MQ=255) tACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGttt > 2:1367542/1‑140 (MQ=255) tACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGttt > 1:1529043/1‑140 (MQ=255) ccGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTcc > 2:1457518/1‑140 (MQ=255) ccGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTcc < 1:1457518/140‑1 (MQ=255) gAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTcccc < 1:1014371/140‑1 (MQ=255) aCGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCata < 1:200199/140‑1 (MQ=255) cGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCatat > 2:150003/1‑140 (MQ=255) gATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATg < 1:1761305/140‑1 (MQ=255) tGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGtt > 1:1029671/1‑140 (MQ=255) tcatcCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATg < 1:730594/140‑1 (MQ=255) tcatcCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATg < 1:1367542/140‑1 (MQ=255) catcCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCat > 1:1243497/1‑128 (MQ=255) tcCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATg < 1:784975/137‑1 (MQ=255) tcCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATg > 2:784975/1‑137 (MQ=255) ttttGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGa < 1:1463469/140‑1 (MQ=255) tgtgGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGaaa > 2:692627/1‑140 (MQ=255) | GGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCT‑‑‑TGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTG‑CCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAAT > NC_000913/2765650‑2765919 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |