BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,660,720	G→A	A103T (GCA→ACA)	mdtF →	multidrug efflux pump RND permease MdtF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,660,720	0	G	A	100.0%	517.8 / NA	150	A103T (GCA→ACA)	mdtF	multidrug efflux pump RND permease MdtF
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (74/76); total (74/76)

Only 100 of 153 total aligned reads displayed.

TAGAAGACTCGGTCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCGCACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGG  >  NC_000913/3660583‑3660853

tAGAAGACTCGGTCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATcaca                                                                                                                                     <  1:1134312/140‑1 (MQ=255)

     gaCTCGGTCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGt                                                                                                                                >  1:182844/1‑140 (MQ=255)

       cTCGGTCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTc                                                                                                                              <  2:709697/140‑1 (MQ=255)

        tCGGTCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCa                                                                                                                             >  1:1010419/1‑140 (MQ=255)

        tCGGTCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCa                                                                                                                             >  2:592008/1‑140 (MQ=255)

        tCGGTCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGGTCa                                                                                                                             >  1:142447/1‑140 (MQ=255)

        tCGGTCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTACTGATATCACACAGGTTCa                                                                                                                             >  2:264835/1‑140 (MQ=255)

          ggTCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAg                                                                                                                           >  1:439626/1‑140 (MQ=255)

          ggTCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAg                                                                                                                           >  1:1549464/1‑140 (MQ=255)

          ggTCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAg                                                                                                                           >  2:40278/1‑140 (MQ=255)

          ggTCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAg                                                                                                                           >  1:70545/1‑140 (MQ=255)

           gTCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGt                                                                                                                          <  1:94946/140‑1 (MQ=255)

            tCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAgg                                                                                                                                 <  1:572808/132‑1 (MQ=255)

            tCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAgg                                                                                                                                 >  2:572808/1‑132 (MQ=255)

                        ttGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTg                                                                                                             >  1:1745363/1‑140 (MQ=255)

                          gAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCa                                                                                                           <  1:1601399/140‑1 (MQ=255)

                           aGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCaa                                                                                                          <  1:849120/140‑1 (MQ=255)

                           aGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCaa                                                                                                          <  1:646190/140‑1 (MQ=255)

                            gCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAAc                                                                                                         <  1:40278/140‑1 (MQ=255)

                             cAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACt                                                                                                        >  1:28073/1‑140 (MQ=255)

                              aaaaTATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTc                                                                                                       >  2:1668073/1‑140 (MQ=255)

                               aaaTATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCg                                                                                                      <  2:487023/140‑1 (MQ=255)

                                      aaTGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGcc                                                                                               <  1:903702/140‑1 (MQ=255)

                                       aTGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCt                                                                                              <  2:1300970/140‑1 (MQ=255)

                                        tGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCtt                                                                                             <  2:1115558/140‑1 (MQ=255)

                                          ggCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGc                                                                                                >  1:1224676/1‑135 (MQ=255)

                                          ggCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCa                                                                                           >  2:1624660/1‑140 (MQ=255)

                                          ggCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCa                                                                                           >  1:1036600/1‑140 (MQ=255)

                                          ggCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCa                                                                                           <  2:597406/140‑1 (MQ=255)

                                          ggCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCa                                                                                           <  1:592008/140‑1 (MQ=255)

                                          ggCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCa                                                                                           >  1:1133938/1‑140 (MQ=255)

                                          ggCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCa                                                                                           <  1:510270/140‑1 (MQ=255)

                                          ggCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCa                                                                                           <  1:204632/140‑1 (MQ=255)

                                          ggCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCa                                                                                           <  1:1256073/140‑1 (MQ=255)

                                          ggCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCa                                                                                           <  2:1306877/140‑1 (MQ=255)

                                          ggCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCa                                                                                           <  2:633067/140‑1 (MQ=255)

                                          ggCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCa                                                                                           <  2:1133938/140‑1 (MQ=255)

                                          ggCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCa                                                                                           <  1:1624660/140‑1 (MQ=255)

                                            cTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCa                                                                                           <  2:1805515/138‑1 (MQ=255)

                                            cTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCAtt                                                                                         >  1:120936/1‑140 (MQ=255)

                                            cTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCAtt                                                                                         >  2:1094532/1‑140 (MQ=255)

                                                    ccTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAg                                                                                 <  2:1539458/140‑1 (MQ=255)

                                                    ccTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAg                                                                                 <  1:1537622/140‑1 (MQ=255)

                                                     cTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCAtt                                                                                         >  1:1161056/1‑131 (MQ=255)

                                                     cTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGc                                                                                >  1:432424/1‑140 (MQ=255)

                                                     cTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGc                                                                                <  1:418613/140‑1 (MQ=255)

                                                       gATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAg                                                                              <  2:1239112/140‑1 (MQ=255)

                                                          gTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTgc                                                                           <  2:439626/140‑1 (MQ=255)

                                                               tGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTgcagcag                                                                      <  1:1217353/140‑1 (MQ=255)

                                                               tGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTgcagcag                                                                      <  1:743511/140‑1 (MQ=255)

                                                                  cTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCCTTACCTGAAGCAGTGcagcagcag                                                                   >  1:556953/1‑140 (MQ=255)

                                                                  cTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGt                                                                             <  2:263044/130‑1 (MQ=255)

                                                                  cTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTg                                                                            >  2:1192721/1‑131 (MQ=255)

                                                                  cTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGcagcagcag                                                                   >  1:1089916/1‑140 (MQ=255)

                                                                  cTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGcagcagcag                                                                   >  1:1374921/1‑140 (MQ=255)

                                                                  cTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGcagcagcag                                                                   >  2:1429691/1‑140 (MQ=255)

                                                                   ttCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGcagcagcag                                                                   <  2:1078705/139‑1 (MQ=255)

                                                                   ttCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAgg                                                                  >  1:720142/1‑140 (MQ=255)

                                                                   ttCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAgg                                                                  >  1:1443666/1‑140 (MQ=255)

                                                                   ttCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAgg                                                                  >  1:1530192/1‑140 (MQ=255)

                                                                     cAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAgggg                                                                >  2:1244943/1‑140 (MQ=255)

                                                                       aCCAGTGATGCGGCGGGCAATGCCTCTAGCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGAt                                                              <  2:1411805/140‑1 (MQ=255)

                                                                        ccAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGAtt                                                             >  2:1404337/1‑140 (MQ=255)

                                                                           gTGATGCGGCGGGAAATAACTCTATCACTCTGACCTTCGAGACTGGGACCTCTCCTGATATCACACAGGGTCAAGTGCAAAATAAAATGCAACTCGCTATGCCTTCAATTCCTGAAGCAATGCAGCAGCAGGGGATTAGc                                                          >  2:615861/1‑140 (MQ=255)

                                                                            tGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCg                                                         >  1:1024317/1‑140 (MQ=255)

                                                                            tGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCg                                                         >  2:485512/1‑140 (MQ=255)

                                                                            tGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCg                                                         >  2:1191210/1‑140 (MQ=255)

                                                                            tGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCg                                                         >  1:1419374/1‑140 (MQ=255)

                                                                                 cggcggGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGAt                                                    <  2:1031138/140‑1 (MQ=255)

                                                                                    cggGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAg                                                 <  1:485512/140‑1 (MQ=255)

                                                                                    cggGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAg                                                 <  2:799150/140‑1 (MQ=255)

                                                                                    cggGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAg                                                 <  2:604045/140‑1 (MQ=255)

                                                                                        cAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGa                                             <  1:1201632/140‑1 (MQ=255)

                                                                                         aaTGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAg                                            <  1:1191210/140‑1 (MQ=255)

                                                                                         aaTGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAg                                            <  2:1024317/140‑1 (MQ=255)

                                                                                         aaTGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAg                                            <  2:647660/140‑1 (MQ=255)

                                                                                         aaTGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTACTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAg                                            <  1:264835/140‑1 (MQ=255)

                                                                                            gCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAg                                            >  2:1210093/1‑137 (MQ=255)

                                                                                            gCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAg                                         <  2:182844/140‑1 (MQ=255)

                                                                                              ctctATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAg                                            >  2:1692407/1‑135 (MQ=255)

                                                                                              ctctATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAg                                            <  1:1692407/135‑1 (MQ=255)

                                                                                              ctctATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTa                                       <  1:1668073/140‑1 (MQ=255)

                                                                                                ctATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAat                                     <  2:46152/140‑1 (MQ=255)

                                                                                                ctATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAat                                     <  2:942802/140‑1 (MQ=255)

                                                                                                ctATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAat                                     <  1:1606673/140‑1 (MQ=255)

                                                                                                   tCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAg                                                 <  1:609274/125‑1 (MQ=255)

                                                                                                     aCTCTGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCt                                <  1:1404337/140‑1 (MQ=255)

                                                                                                       tctGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGa                              >  1:1632055/1‑140 (MQ=255)

                                                                                                        ctGACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGAt                             >  1:1080043/1‑140 (MQ=255)

                                                                                                          gACCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATgg                           >  2:1725146/1‑140 (MQ=255)

                                                                                                           aCCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGt                          >  1:1823983/1‑140 (MQ=255)

                                                                                                           aCCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGt                          >  2:756341/1‑140 (MQ=255)

                                                                                                           aCCTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGt                          >  1:1017262/1‑140 (MQ=255)

                                                                                                             cTTCGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAg                        <  2:720142/140‑1 (MQ=255)

                                                                                                                cGAGACTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAgcgg                     >  2:1651132/1‑140 (MQ=255)

                                                                                                                   gaCTGGGACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGt                  <  2:120936/140‑1 (MQ=255)

                                                                                                                        ggACATCTCCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTAtt             >  1:1667019/1‑140 (MQ=255)

                                                                                                                             tctcCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGa        >  2:403248/1‑140 (MQ=255)

                                                                                                                              ctcCTGATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGAt       >  2:442266/1‑140 (MQ=255)

                                                                                                                                   gATATCACACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACgg  <  2:802794/140‑1 (MQ=255)

TAGAAGACTCGGTCACTCAGGTGATTGAGCAAAATATGAATGGGCTTGATGGCCTGATGTACATGTCTTCAACCAGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCGCACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGG  >  NC_000913/3660583‑3660853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`