BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,709,972	A→C	V14G (GTC→GGC)	rpoE ←	RNA polymerase sigma E factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,709,972	0	A	C	100.0%	391.4 / NA	106	V14G (GTC→GGC)	rpoE	RNA polymerase sigma E factor
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (62/44); total (62/44)

Only 100 of 110 total aligned reads displayed.

CACGATAGGCTTTAATAAAAGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAGTGTCTCG  >  NC_000913/2709835‑2710107

cACGATAGGCTTTAATAAAAGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGccc                                                                                                                                       >  2:631501/1‑140 (MQ=255)

    aTAGGCTTTAATAAAAGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGtt                                                                                                                                   <  2:529878/140‑1 (MQ=255)

    aTAGGCTTTAATAAAAGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGtt                                                                                                                                   <  2:603517/140‑1 (MQ=255)

         cTTTAATAAAAGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAAcc                                                                                                                              <  2:508675/140‑1 (MQ=255)

             aataaAAGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGa                                                                                                                          >  1:949390/1‑140 (MQ=255)

             aataaAAGCTTCGTGTACCACATCGGGAACATCACCCTACGGCACATAGCGGGAAACCAGACTCGACACTTTATGCTCACAGCGCACTACCAGGAAGTAAAAGCCTTTCTGATCTCCCTTCTGGCTCCGTTCATCCAggt                                                                                                                          >  2:260495/1‑139 (MQ=255)

                  aaGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAAcc                                                                                                                              <  1:576954/131‑1 (MQ=255)

                  aaGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAAcc                                                                                                                              >  2:576954/1‑131 (MQ=255)

                  aaGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTgg                                                                                                                     >  1:1118694/1‑140 (MQ=255)

                  aaGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTgg                                                                                                                     <  2:687369/140‑1 (MQ=255)

                  aaGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTgg                                                                                                                     >  1:166105/1‑140 (MQ=255)

                  aaGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTgg                                                                                                                     <  2:745839/140‑1 (MQ=255)

                   aGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGt                                                                                                                    >  2:158554/1‑140 (MQ=255)

                   aGCTTCTTGTACCACATCGGAACCATCGCCCGACGGCACATAGCGGGAACCCAGGCTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGt                                                                                                                    <  1:867446/140‑1 (MQ=255)

                        tttGTACGACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGtt                                                                                                               <  2:1164726/139‑1 (MQ=255)

                        cttGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGtt                                                                                                               >  2:163068/1‑140 (MQ=255)

                          tGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTaa                                                                                                             >  2:70942/1‑140 (MQ=255)

                          tGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTaa                                                                                                             >  1:330771/1‑140 (MQ=255)

                              ccACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTgc                                                                                                         >  1:800370/1‑140 (MQ=255)

                                 caTCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTgctcg                                                                                                      >  1:650947/1‑140 (MQ=255)

                                 caTCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTgctcg                                                                                                      >  2:786018/1‑140 (MQ=255)

                                  aTCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTgctcgc                                                                                                     >  2:292819/1‑140 (MQ=255)

                                   tCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTgctcgct                                                                                                    >  2:1058652/1‑140 (MQ=255)

                                    cGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTgctcgctc                                                                                                   >  1:110214/1‑140 (MQ=255)

                                      ggAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCAt                                                                                                 >  1:1140691/1‑140 (MQ=255)

                                           aTCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAg                                                                                            >  1:859624/1‑140 (MQ=255)

                                           aTCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAg                                                                                            <  1:624576/140‑1 (MQ=255)

                                            tCACCCGACGGCACATAGCGGGCAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAgg                                                                                           >  2:1149431/1‑140 (MQ=255)

                                            tCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAgg                                                                                           >  2:377441/1‑140 (MQ=255)

                                            tCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAgg                                                                                           >  1:1040553/1‑140 (MQ=255)

                                            tCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAgg                                                                                           >  1:211680/1‑140 (MQ=255)

                                            tCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAgg                                                                                           >  1:163895/1‑140 (MQ=255)

                                             cACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGt                                                                                          >  1:1011141/1‑140 (MQ=255)

                                             cACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGACCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGt                                                                                          >  1:81047/1‑140 (MQ=255)

                                              aCCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTa                                                                                         >  1:922618/1‑140 (MQ=255)

                                                 cGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAg                                                                                      >  2:296150/1‑140 (MQ=255)

                                                  gACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGt                                                                                     >  2:559158/1‑140 (MQ=255)

                                                     ggCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGtctc                                                                                  >  2:60027/1‑140 (MQ=255)

                                                       cacaTAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTccc                                                                                <  2:507607/140‑1 (MQ=255)

                                                         caTAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCcca                                                                              <  1:292819/140‑1 (MQ=255)

                                                              cGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCccaaacca                                                                         >  1:435894/1‑140 (MQ=255)

                                                                ggAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCccaaaccaaa                                                                       >  2:549803/1‑140 (MQ=255)

                                                                 gAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGCAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGCCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAAt                                                                      >  1:961634/1‑140 (MQ=255)

                                                                      cAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCa                                                                 >  1:676493/1‑140 (MQ=255)

                                                                      cAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCa                                                                 <  2:432069/140‑1 (MQ=255)

                                                                        gACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCAcg                                                               >  1:189803/1‑140 (MQ=255)

                                                                        gACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCAcg                                                               <  1:377441/140‑1 (MQ=255)

                                                                             gCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTa                                                          >  1:342309/1‑140 (MQ=255)

                                                                                 cTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGa                                                      <  1:706685/140‑1 (MQ=255)

                                                                                     aTGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACg                                                  <  2:676082/140‑1 (MQ=255)

                                                                                     aTGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACg                                                  >  2:182645/1‑140 (MQ=255)

                                                                                       gCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGcc                                                <  2:638954/140‑1 (MQ=255)

                                                                                       gCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGcc                                                <  1:1058652/140‑1 (MQ=255)

                                                                                       gCTGATAGCACACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGcc                                                <  2:416544/140‑1 (MQ=255)

                                                                                          gATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACt                                             <  1:786018/140‑1 (MQ=255)

                                                                                           aTAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTc                                            >  2:446075/1‑140 (MQ=255)

                                                                                           aTAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTc                                            >  1:640613/1‑140 (MQ=255)

                                                                                           aTAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTc                                            >  1:676125/1‑140 (MQ=255)

                                                                                           aTAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTACTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTc                                            >  1:1128488/1‑140 (MQ=255)

                                                                                            tAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTcc                                           >  2:94901/1‑140 (MQ=255)

                                                                                            tAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTcc                                           >  2:91796/1‑140 (MQ=255)

                                                                                              gcgcgcTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGTTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACCCCACTCCAt                                         <  1:260495/140‑1 (MQ=255)

                                                                                              gcgcACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCAt                                         <  2:342309/140‑1 (MQ=255)

                                                                                                  aCTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGc                                     >  1:935428/1‑140 (MQ=255)

                                                                                                     aCCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACg                                                  >  1:329639/1‑124 (MQ=255)

                                                                                                     aCCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACg                                                  <  2:329639/124‑1 (MQ=255)

                                                                                                            aGTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGa                           >  1:622512/1‑140 (MQ=255)

                                                                                                             gTTAAAGTCTTTCTGATCTCCCTTCTGGCGCCCTGCCACCAGGCCCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCGTTAGCTGCAATTTGag                          <  2:444256/140‑1 (MQ=255)

                                                                                                             gTTAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGag                          <  1:230666/140‑1 (MQ=255)

                                                                                                              ttAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagc                         >  1:688574/1‑140 (MQ=255)

                                                                                                              ttAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagc                         >  2:640064/1‑140 (MQ=255)

                                                                                                              ttAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagc                         >  1:1117546/1‑140 (MQ=255)

                                                                                                               tAAAGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagca                        <  1:570112/140‑1 (MQ=255)

                                                                                                                aaaGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaa                       >  2:892031/1‑140 (MQ=255)

                                                                                                                aaaGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaa                       >  1:716523/1‑140 (MQ=255)

                                                                                                                aaaGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaa                       >  1:1058603/1‑140 (MQ=255)

                                                                                                                aaaGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaa                       >  1:483797/1‑140 (MQ=255)

                                                                                                                aaaGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaa                       >  1:405575/1‑140 (MQ=255)

                                                                                                                 aaGGCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaag                      >  2:1101234/1‑140 (MQ=255)

                                                                                                                   ggCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                    <  2:483797/140‑1 (MQ=255)

                                                                                                                   ggCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                    <  2:949390/140‑1 (MQ=255)

                                                                                                                   ggCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                    <  1:549803/140‑1 (MQ=255)

                                                                                                                   ggCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                    <  2:859624/140‑1 (MQ=255)

                                                                                                                   ggCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                    <  2:755579/140‑1 (MQ=255)

                                                                                                                   ggCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                    <  1:1109433/140‑1 (MQ=255)

                                                                                                                   ggCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                    <  2:676493/140‑1 (MQ=255)

                                                                                                                   ggCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                    <  1:296150/140‑1 (MQ=255)

                                                                                                                   ggCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                    <  2:166105/140‑1 (MQ=255)

                                                                                                                   ggCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                    <  2:284235/140‑1 (MQ=255)

                                                                                                                   ggCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                    <  1:229300/140‑1 (MQ=255)

                                                                                                                   ggCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                    <  2:405575/140‑1 (MQ=255)

                                                                                                                   ggCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACAGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                    <  2:941430/140‑1 (MQ=255)

                                                                                                                    gCTTTCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAgcaagcaa                   >  2:211696/1‑140 (MQ=255)

                                                                                                                        tCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAggg               >  1:138757/1‑140 (MQ=255)

                                                                                                                        tCTGATCTCCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTACTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAggg               <  2:1128488/140‑1 (MQ=255)

                                                                                                                              ctcCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                    <  2:672626/129‑1 (MQ=255)

                                                                                                                              ctcCCTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                    >  1:672626/1‑129 (MQ=255)

                                                                                                                                cccTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCTACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAgtg       >  2:479573/1‑140 (MQ=255)

                                                                                                                                 ccTTCTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAgtgt      >  1:825763/1‑140 (MQ=255)

                                                                                                                                     cTGGCCCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAGTGTCTCg  <  2:460267/140‑1 (MQ=255)

CACGATAGGCTTTAATAAAAGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAGTGTCTCG  >  NC_000913/2709835‑2710107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`