Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,037,062 T→A noncoding (1532/1542 nt) rrsA → 16S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,037,0620TA100.0% 112.2 / NA 42noncoding (1532/1542 nt)rrsA16S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (19/23);  total (19/23)

TTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTT  >  NC_000913/4036954‑4037196
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ttGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGa                                                                                                         <  2:456243/140‑1 (MQ=11)
   cAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGt                                                                                                      >  1:11606/1‑140 (MQ=17)
    aaaaGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTg                                                                                                     <  1:57565/140‑1 (MQ=18)
        gaagTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTca                                                                                                 <  1:717364/140‑1 (MQ=18)
                  gCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGt                                                                                       >  1:103761/1‑140 (MQ=17)
                    ttAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCt                                                                                     >  1:682722/1‑140 (MQ=17)
                            cGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGaaaa                                                                             >  2:519620/1‑140 (MQ=21)
                                aGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAg                                                                         <  2:463862/140‑1 (MQ=37)
                                 gggCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGc                                                                        <  1:348805/140‑1 (MQ=37)
                                        tACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTaaaa                                                                 <  2:304731/140‑1 (MQ=37)
                                              tttGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTa                                                           <  2:103761/140‑1 (MQ=21)
                                              tttGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTa                                                           >  1:543147/1‑140 (MQ=21)
                                              tttGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTa                                                           <  2:571388/140‑1 (MQ=37)
                                               ttGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTAc                                                          <  1:143955/140‑1 (MQ=37)
                                                tgtgATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACa                                                         >  1:352221/1‑140 (MQ=21)
                                                   gATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGc                                                      >  1:295040/1‑140 (MQ=21)
                                                     ttCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCC‑TACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTg                                                   >  1:654697/1‑140 (MQ=255)
                                                            cTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCC‑TACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCa                                            <  2:654697/140‑1 (MQ=255)
                                                                          tAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAgcg                               <  2:560275/140‑1 (MQ=21)
                                                                          tAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAgcg                               >  1:61544/1‑140 (MQ=21)
                                                                          tAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAgcg                               <  2:262129/140‑1 (MQ=21)
                                                                            aCAAGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCa                             <  1:342030/140‑1 (MQ=21)
                                                                               aGGTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCAccc                          >  1:314312/1‑140 (MQ=21)
                                                                                ggTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAgcg                               >  1:374476/1‑134 (MQ=21)
                                                                                ggTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAgcg                               <  2:374476/134‑1 (MQ=21)
                                                                                 gTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAgcg                               >  1:386232/1‑133 (MQ=21)
                                                                                 gTAACCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAgcg                               <  2:386232/133‑1 (MQ=21)
                                                                                   aaCCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGa                      <  2:543147/140‑1 (MQ=21)
                                                                                    aCCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGAt                     <  2:641651/140‑1 (MQ=21)
                                                                                    aCCGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGAt                     <  2:249353/140‑1 (MQ=21)
                                                                                     ccGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCa                             >  2:90969/1‑131 (MQ=21)
                                                                                     ccGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCa                             <  1:90969/131‑1 (MQ=21)
                                                                                     ccGTAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATa                    <  2:295040/140‑1 (MQ=21)
                                                                                        tAGGGGAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAgg                 <  2:352221/140‑1 (MQ=21)
                                                                                           gggAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTg              >  2:31347/1‑140 (MQ=21)
                                                                                            ggAACCTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGa             >  1:547664/1‑140 (MQ=21)
                                                                                                ccTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTc         >  2:484786/1‑140 (MQ=21)
                                                                                                ccTGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTc         >  1:67976/1‑140 (MQ=25)
                                                                                                  tGCGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCgg       <  1:218730/140‑1 (MQ=21)
                                                                                                   gCGGTTGGAACACCTCC‑TACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCggtg     >  1:160428/1‑140 (MQ=255)
                                                                                                    cGGTTGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCggtg     >  2:67208/1‑140 (MQ=21)
                                                                                                       ttGGAACACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGtt  <  1:519620/140‑1 (MQ=21)
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TTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTT  >  NC_000913/4036954‑4037196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑