Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,173,361 | 0 | C | . | 100.0% | 211.9 / NA | 50 | pseudogene (918/1358 nt) | gatC | galactitol‑specific PTS enzyme IIC component |
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (24/26); total (24/26) | |||||||||||
* | NC_000913 | 2,173,362 | 0 | C | . | 100.0% | 211.9 / NA | 50 | pseudogene (917/1358 nt) | gatC | galactitol‑specific PTS enzyme IIC component |
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (24/26); total (24/26) |
CACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAC > NC_000913/2173226‑2173492 || cACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATaccacc < 2:249057/137‑1 (MQ=255) cACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATaccacc > 1:249057/1‑137 (MQ=255) cGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATaccaccgccgt < 1:460434/140‑6 (MQ=255) cACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTc > 1:538755/1‑140 (MQ=255) aTCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGc < 1:1000578/140‑1 (MQ=255) aTCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGc < 1:1118202/140‑1 (MQ=255) tCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGcc < 2:788051/140‑1 (MQ=255) cACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGAt < 1:210618/140‑1 (MQ=255) aagaagCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGGGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAg < 2:460025/140‑1 (MQ=255) agCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCa < 2:902729/140‑1 (MQ=255) ggtggCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAg < 2:1020286/140‑1 (MQ=255) cAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTcc > 2:356939/1‑140 (MQ=255) gCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgc > 2:1120601/1‑140 (MQ=255) gCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgc > 1:474820/1‑140 (MQ=255) gCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgc > 1:742520/1‑140 (MQ=255) cAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgccg > 2:526962/1‑140 (MQ=255) gcagcaCCTGATTACCCGGCACACAAACAGCAATTAAAAGG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTc < 2:1103861/140‑1 (MQ=255) cagcaCCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCg > 2:323354/1‑140 (MQ=255) cagcaCCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCg > 1:288544/1‑140 (MQ=255) gATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGt > 2:1164441/1‑140 (MQ=255) aTTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAAc < 2:288544/140‑1 (MQ=255) ccGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTa < 2:538755/140‑1 (MQ=255) ggCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACg > 1:759487/1‑140 (MQ=255) ggCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACg > 1:145374/1‑140 (MQ=255) cacacaAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAg > 1:605627/1‑140 (MQ=255) cacacaAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAg > 2:609045/1‑140 (MQ=255) ccaaaaaCAGAAATAAAAAGG‑‑GTGAGGGGGAAAAAAATCAGGTTTGCCGAT‑CC‑CCCCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 2:302867/136‑1 (MQ=255) acacaAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 2:23721/140‑1 (MQ=255) acacaAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 1:802521/140‑1 (MQ=255) acacaAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 1:526962/140‑1 (MQ=255) acacaAACAGCAATAAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 1:1176566/140‑1 (MQ=255) acacaAACAGAAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCGGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 1:104547/140‑1 (MQ=255) aaacaAACAGCAATAAAAAGG‑‑GGAAGTGGAATAAAAAGCAGGCTTCCCGATCCCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 2:145374/138‑1 (MQ=255) aaaCAGCAATAAAAATG‑‑GTGAGGGGGATAAAAATCAGGCTGGCCGATAC‑‑CCCCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGc < 2:1209458/140‑1 (MQ=255) aaCAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCt < 1:654365/140‑1 (MQ=255) aCAGCAATTAAAATG‑‑GTGAGGGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCtt < 2:373220/140‑1 (MQ=255) aGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc > 1:650232/1‑132 (MQ=255) aGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 2:650232/132‑1 (MQ=255) aaTG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCg < 1:1120601/140‑1 (MQ=255) g‑‑gTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTa > 1:145071/1‑140 (MQ=255) gTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaa < 1:323354/140‑1 (MQ=255) gTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaa > 1:579199/1‑140 (MQ=255) gTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaa > 1:1170590/1‑140 (MQ=255) tGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaaa < 2:474820/140‑1 (MQ=255) ggAGTGGAATAAAAATCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaaa < 2:730300/139‑1 (MQ=255) gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGTTTAGCGATGGGCGTTAAAc > 1:470014/1‑140 (MQ=255) gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAc > 1:294824/1‑140 (MQ=255) gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAc > 1:403845/1‑140 (MQ=255) aGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcc < 1:905512/140‑1 (MQ=255) aGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcc > 2:15485/1‑140 (MQ=255) tAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatg > 2:29049/1‑140 (MQ=255) tAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatg < 1:609045/140‑1 (MQ=255) aaaaTCAGGTTGTCCGATACAA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatgat < 2:571466/140‑1 (MQ=255) aaaTCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatgatg > 1:1170349/1‑140 (MQ=255) aTCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATggg < 2:403845/140‑1 (MQ=255) cTTGCCGATCCCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAAt < 1:695070/140‑1 (MQ=255) gCCGATACCA‑‑CCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAc > 1:1006754/1‑140 (MQ=255) || CACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATG‑‑GTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCC‑‑‑CAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAC > NC_000913/2173226‑2173492 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |