BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,364,324	G→T	W506C (TGG→TGT)	yhcD →	putative fimbrial usher protein YhcD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,364,324	0	G	T	100.0%	505.5 / NA	143	W506C (TGG→TGT)	yhcD	putative fimbrial usher protein YhcD
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (78/65); total (78/65)

Only 100 of 158 total aligned reads displayed.

GGTCTAACTCCATTCTGGGTGGTTTCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGGCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCCACACTGTATACTCGCCATGACGATCATAAAACCCACTATGGTA  >  NC_000913/3364191‑3364460

ggTCTAACTCCATTCTGGGTGGTTTCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCAt                                                                                                                                    <  1:862003/140‑1 (MQ=255)

 gTCTAACTCCATTCTGGGTGGTTTCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATc                                                                                                                                   >  2:173576/1‑140 (MQ=255)

 gTCTAACTCCATTCTGGGTGGTTTCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATc                                                                                                                                   >  1:659482/1‑140 (MQ=255)

  tCTAACTCCATTCTGGGTGGTTTCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCa                                                                                                                                  >  2:716703/1‑140 (MQ=255)

  tCTAACTCCATTCTGGGTGGTTTCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCa                                                                                                                                  >  1:429039/1‑140 (MQ=255)

      aCTCCATTCTGGGTGGTTTCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACtt                                                                                                                              >  1:409401/1‑140 (MQ=255)

          cATTCTGGGTGGTTTCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTg                                                                                                                          <  2:601887/140‑1 (MQ=255)

           aTTCTGGGTGGTTTCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGc                                                                                                                         >  2:497917/1‑140 (MQ=255)

           aTTCTGGGTGGTTTCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGc                                                                                                                         >  2:882373/1‑140 (MQ=255)

           aTTCTGGGTGGTTTCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGc                                                                                                                         >  2:61264/1‑140 (MQ=255)

           aTTCTGGGTGGTTTCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGc                                                                                                                         >  2:637346/1‑140 (MQ=255)

            ttCTGGGTGGTTTCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCt                                                                                                                        >  1:1001708/1‑140 (MQ=255)

                 ggtggtTTCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGa                                                                                                                   >  2:386758/1‑140 (MQ=255)

                      tttCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAaata                                                                                                              >  1:266192/1‑140 (MQ=255)

                      tttCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGATTCAGAAaata                                                                                                              >  1:349176/1‑140 (MQ=255)

                        tCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAaataat                                                                                                            <  1:381604/140‑1 (MQ=255)

                        tCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAaataat                                                                                                            <  2:30077/140‑1 (MQ=255)

                         cAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATg                                                                                                           <  2:484275/140‑1 (MQ=255)

                           aCATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGaa                                                                                                         <  2:659482/140‑1 (MQ=255)

                           aCATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGaa                                                                                                         >  1:272217/1‑140 (MQ=255)

                           aCATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGaa                                                                                                         <  1:794365/140‑1 (MQ=255)

                             aTCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGa                                                                                                       <  1:637346/140‑1 (MQ=255)

                             aTCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGa                                                                                                       <  2:1001708/140‑1 (MQ=255)

                             aTCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGa                                                                                                       <  2:253485/140‑1 (MQ=255)

                             aTCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGa                                                                                                       <  1:207396/140‑1 (MQ=255)

                               cAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACg                                                                                                     <  1:936818/140‑1 (MQ=255)

                                aGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGa                                                                                                    >  2:689572/1‑140 (MQ=255)

                                aGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGa                                                                                                    <  2:288881/140‑1 (MQ=255)

                                 gTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGAt                                                                                                   >  2:577150/1‑140 (MQ=255)

                                  tGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATg                                                                                                  <  1:259437/140‑1 (MQ=255)

                                  tGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATg                                                                                                  <  2:272217/140‑1 (MQ=255)

                                    gCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGt                                                                                                >  1:164432/1‑140 (MQ=255)

                                      tataAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGa                                                                                              >  1:443925/1‑140 (MQ=255)

                                      tataAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGa                                                                                              <  1:882373/140‑1 (MQ=255)

                                      tataAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGa                                                                                              <  2:354591/140‑1 (MQ=255)

                                       ataAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGAt                                                                                             <  1:497917/140‑1 (MQ=255)

                                       ataAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGAt                                                                                             >  2:1058547/1‑140 (MQ=255)

                                       ataAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGAt                                                                                             <  1:577154/140‑1 (MQ=255)

                                       ataAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGAt                                                                                             <  2:424126/140‑1 (MQ=255)

                                            aCATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGtt                                                                                        <  2:922506/140‑1 (MQ=255)

                                                  aGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGt                                                                                  >  2:553416/1‑140 (MQ=255)

                                                  aGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGt                                                                                  >  1:153665/1‑140 (MQ=255)

                                                     tACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCaa                                                                               <  1:311288/140‑1 (MQ=255)

                                                     tACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCaa                                                                               <  1:55409/140‑1 (MQ=255)

                                                      acgacgGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAAc                                                                              >  2:209684/1‑140 (MQ=255)

                                                      acgacgGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAAc                                                                              >  1:327108/1‑140 (MQ=255)

                                                      acgacgGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAAc                                                                              >  1:358766/1‑140 (MQ=255)

                                                        gacgGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACAt                                                                            <  1:6096/140‑1 (MQ=255)

                                                        gacgGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACAt                                                                            <  1:30454/140‑1 (MQ=255)

                                                        gacgGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACAt                                                                            <  2:333232/140‑1 (MQ=255)

                                                        gacgGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTATACGTCAACAt                                                                            >  2:807276/1‑140 (MQ=255)

                                                            gTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGt                                                                        >  1:1028626/1‑140 (MQ=255)

                                                            gTGACAATGACTCAAGCAACCTTAATATTAACCGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTCAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGt                                                                        >  1:89714/1‑140 (MQ=255)

                                                             tGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTa                                                                       >  1:465360/1‑140 (MQ=255)

                                                             tGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTa                                                                       >  2:136121/1‑140 (MQ=255)

                                                             tGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTa                                                                       <  2:828329/140‑1 (MQ=255)

                                                             tGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTa                                                                       <  2:701697/140‑1 (MQ=255)

                                                             tGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTATACGTCAACATCAGTa                                                                       <  1:807276/140‑1 (MQ=255)

                                                              gACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTAAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTAt                                                                      >  1:390791/1‑140 (MQ=255)

                                                               aCAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTAtt                                                                     <  2:280128/140‑1 (MQ=255)

                                                                      cTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACATGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTg                                                              >  2:903236/1‑140 (MQ=255)

                                                                      cTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTg                                                              <  2:1028626/140‑1 (MQ=255)

                                                                      cTCAAGCAACCTTAATATTAACTCGAACAAAGCGTTCAAACACGCCCCGGTTTCCCTCAACTGTCAGCATCACCTTAGTGCTTCAGAAAATAATGAAGACGATGGTTATCGGTTCTACGTCAATACCAGTATTTCATTTg                                                              <  2:244548/140‑1 (MQ=255)

                                                                       tCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTg                                                              <  1:610018/139‑1 (MQ=255)

                                                                        cAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGc                                                            <  1:123154/140‑1 (MQ=255)

                                                                        cAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGc                                                            <  1:386758/140‑1 (MQ=255)

                                                                           gCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGa                                                         >  2:359006/1‑140 (MQ=255)

                                                                           gCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGa                                                         <  2:962112/140‑1 (MQ=255)

                                                                           gCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGa                                                         <  2:76066/140‑1 (MQ=255)

                                                                               ccTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCaa                                                     >  1:923598/1‑140 (MQ=255)

                                                                                cTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCaaa                                                    <  1:278104/140‑1 (MQ=255)

                                                                                  tAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAaca                                                  <  1:668868/140‑1 (MQ=255)

                                                                                     tatTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCg                                               <  2:897460/140‑1 (MQ=255)

                                                                                      atTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCg                                               >  2:958162/1‑139 (MQ=255)

                                                                                      atTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCg                                               <  1:958162/139‑1 (MQ=255)

                                                                                       ttAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGcc                                             <  1:372630/140‑1 (MQ=255)

                                                                                       ttAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGcc                                             <  1:689572/140‑1 (MQ=255)

                                                                                       ttAACTGGAAAAAAGCTTTCAACCACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAAAAAATAATAAAGACGAGGGTGCTCTGTTCTCCATAAACATCAGTATTCTTTTTGGCAGACAAAACgccgcc                                             <  2:310886/140‑1 (MQ=255)

                                                                                       taaaCTGGAAAAAAGGGTTCAAACACGCCACGTTTTCCGTCAATTTTCAGCACCATCTTAGTGCTTCAAAAAATAAGGAAGACGATGGTGACCTGTTCTACGTCAACATCATTTTTCCTTTTGGCAAACAAAACCCCGcc                                             <  2:753941/138‑1 (MQ=255)

                                                                                       taaaCTGGAAAAAAGCGTTAAAACCCGCCACGGTTTCCGATATCTGTCAGCATCAACTTAGTGCTTAAGAAAATAATGAAGACGAGGGTGATTTGTTCTACGTCAACATCAGTATTCCTTTTGCCAGACCAAACACCGcc                                             <  2:153665/138‑1 (MQ=255)

                                                                                        tAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCca                                            <  1:903236/140‑1 (MQ=255)

                                                                                        tAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCca                                            <  1:7119/140‑1 (MQ=255)

                                                                                        tAACTGAAAAAAGGCGTTAAAACACGCCACGTTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTTTTCCATTTGGCATATCAAACACCGCca                                            <  2:948665/140‑1 (MQ=255)

                                                                                         aaCTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCTTTTTGGCAGATCAACCGCCGCcac                                           <  2:598473/140‑1 (MQ=255)

                                                                                         aaCTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCcac                                           >  1:717374/1‑140 (MQ=255)

                                                                                          aCTGAAACAAAGCTTTCAAACACCCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTACAGAAAATAAGGAAGACGATGGTTATTTTTTCTACGTCAACATCATTATTCAATTTGGCAAATCAAACACCGCcaca                                          <  2:358766/140‑1 (MQ=255)

                                                                                              gAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCCACACTGt                                      >  2:869147/1‑140 (MQ=255)

                                                                                               aaCAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCCACACTGta                                     >  1:1009906/1‑140 (MQ=255)

                                                                                               aaCAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCCACACTGta                                     >  1:595687/1‑140 (MQ=255)

                                                                                                    aGCGTTCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCCACACTGTATACTc                                >  1:1046525/1‑140 (MQ=255)

                                                                                                        ttCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGcc                                             <  1:987999/123‑1 (MQ=255)

                                                                                                        ttCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCCACACTGTATACTCGCCa                            >  1:736758/1‑140 (MQ=255)

                                                                                                        ttCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCCACACTGTATACTCGCCa                            >  1:232812/1‑140 (MQ=255)

                                                                                                         tCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCCACACTGTATACTCGCCAt                           >  1:969447/1‑140 (MQ=255)

                                                                                                         tCAAACACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCCACACTGTATACTCGCCAt                           >  1:586733/1‑140 (MQ=255)

                                                                                                            aaCACGCCACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAAAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCCACACTGTATACTCGCCATGAc                        <  2:576583/140‑1 (MQ=255)

                                                                                                                   cagggTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTAAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCTTTTGGCAGACCAAACACCGCCACACTGTATACTCGCCATGACGATCATa                 <  2:118089/137‑1 (MQ=255)

                                                                                                                   cACGGTTTCCGTCAACTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCCACACTGTATACTCGCCATGACGATCATa                 >  1:321042/1‑140 (MQ=255)

                                                                                                                             gTCAACTGTCAGCATCAACTTAGTGATTCAGAAAATAATGAAGACGATGGTGATCTTTTCTACGTCAACATCAGTATTCCTTTTGGCAGATCAAACACCGCCACACTGTATACTCGCCATGACGATCATAAAACCCACTa       <  2:349176/140‑1 (MQ=255)

                                                                                                                                  cTGTCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCCACACTGTATACTCGCCATGACGATCATAAAACCCACTATGGTa  >  1:332880/1‑140 (MQ=255)

GGTCTAACTCCATTCTGGGTGGTTTCAACATCAGTGGCTATAAAACATATAGTTACGACGGTGACAATGACTCAAGCAACCTTAATATTAACTGGAACAAAGCGTTCAAACACGCCACGGTTTCCGTCAACTGGCAGCATCAACTTAGTGCTTCAGAAAATAATGAAGACGATGGTGATCTGTTCTACGTCAACATCAGTATTCCATTTGGCAGATCAAACACCGCCACACTGTATACTCGCCATGACGATCATAAAACCCACTATGGTA  >  NC_000913/3364191‑3364460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`