| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,628,311 | G→T | L410I (CTC→ATC) | rbbA ← | ribosome‑associated ATPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,628,311 | 0 | G | T | 97.8% | 162.9 / ‑4.8 | 46 | L410I (CTC→ATC) | rbbA | ribosome‑associated ATPase |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (21/24); total (22/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCGACCATCAACTGCCAGAACATATCCCTCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACGGGCATGTAACTCAAGGTTTTGCCGCACGGT > NC_000913/3628184‑3628446 | tCGACCATCAACTGCCAGAACATATCCCTCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTc < 2:801816/140‑1 (MQ=255) cGACCATCAACTTCCAAAACATATCCCTCCCCCCGGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTcc < 2:21645/140‑1 (MQ=255) aTCAACTGCCAGAACATATCCCTCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAg > 1:815439/1‑140 (MQ=255) acAACTGCCAGAACATACCCCTCCCCCCCGGATCGACTCCAGAAGTAGGCTCATCGAGGATTAACATCCCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGa < 2:851308/139‑1 (MQ=255) cAACTGCCAGAACATATCCCTCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGaa > 2:24048/1‑140 (MQ=255) aaCTGCCAGAACATATCCCTCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAat < 2:815439/140‑1 (MQ=255) ccAGAACATATCCCTCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCtt > 1:231242/1‑140 (MQ=255) ccAGAACATATCCCTCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCtt > 2:201012/1‑140 (MQ=255) tCCCTCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGtt > 1:839734/1‑140 (MQ=255) cccTCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTg < 1:724355/140‑1 (MQ=255) tCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGc > 1:373759/1‑140 (MQ=255) gCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCtt > 2:637105/1‑140 (MQ=255) ccACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTa > 1:994095/1‑140 (MQ=255) cACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAAcgtcgt < 1:688769/131‑1 (MQ=255) cACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAAcgtcgt > 2:688769/1‑131 (MQ=255) cGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAAcgctcg < 2:599327/140‑1 (MQ=255) acacCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAAcgctcgct > 1:379609/1‑140 (MQ=255) tAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGcc < 2:865535/140‑1 (MQ=255) ggCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCAc > 1:50101/1‑140 (MQ=255) ggCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCAc > 2:586181/1‑140 (MQ=255) cTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCActc > 2:567797/1‑140 (MQ=255) cTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCActc > 2:431273/1‑140 (MQ=255) tCGAGGATTAACATCTCCGGGCGATGTATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATTCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGc > 2:619046/1‑140 (MQ=255) cGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCg < 2:642105/140‑1 (MQ=255) cGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCg < 2:939936/140‑1 (MQ=255) cGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCg > 1:642105/1‑140 (MQ=255) aaCATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTc < 2:373759/140‑1 (MQ=255) tcCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGTGGGAATTTCCGCTTc < 1:627136/140‑1 (MQ=255) cGGGCGATGAATCCCCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCg < 1:933273/140‑1 (MQ=255) cGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAGCGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCg < 2:432182/140‑1 (MQ=255) cGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCg > 1:109962/1‑140 (MQ=255) cGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCg < 2:231242/140‑1 (MQ=255) cGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCC‑CTCTTGCGGGAATTTCCGCTTCCgg > 2:853425/1‑140 (MQ=255) ggCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCggg < 1:24048/140‑1 (MQ=255) cGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGAt > 2:515780/1‑140 (MQ=255) gATGTATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATTCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGAtg < 1:619046/140‑1 (MQ=255) tGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGAtgtg < 2:839734/140‑1 (MQ=255) accgccaccgccAGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGTTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGaaacaa > 2:187938/1‑140 (MQ=255) ccaccgccaGCGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACgg < 1:586181/140‑1 (MQ=255) cGAAAGCCGCTGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACGGGCATGTAACt < 2:109962/140‑1 (MQ=255) tGGCGAATGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACGGGCATGTAACTCAAGGTTTTg > 2:626189/1‑140 (MQ=255) aaTGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACGGGCATGTAACTCAAGGTTTTGCCGCa < 2:805674/140‑1 (MQ=255) tGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACGGGCATGTAACTCAAGGTTTTGCCGCACg > 2:587067/1‑140 (MQ=255) tGCCGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACGGGCATGTAACTCAAGGTTTTGCCGCACg < 1:431273/140‑1 (MQ=255) ccGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACGGGCATGTAACTCAAGGTTTTGCCGCACGGt < 1:367360/140‑1 (MQ=255) ccGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACGGGCATGTAACTCAAGGTTTTGCCGCACGGt < 1:637105/140‑1 (MQ=255) ccGATCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACGGGCATGTAACTCAAGGTTTTGCCGCACGGt < 2:19144/140‑1 (MQ=255) | TCGACCATCAACTGCCAGAACATATCCCTCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACGGGCATGTAACTCAAGGTTTTGCCGCACGGT > NC_000913/3628184‑3628446 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |