Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,011,317 T→C pseudogene (1035/1129 nt) yedN ← putative type III secreted effector, N‑terminal fragment

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,011,3170TC100.0% 457.5 / NA 116pseudogene (1035/1129 nt)yedNputative type III secreted effector, N‑terminal fragment
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (54/62);  total (54/62)

Only 100 of 117 total aligned reads displayed.

CTCTATTCCAGTGACACAATTGCGCCTAATTAATTACATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTC  >  NC_000913/2011184‑2011449
                                                                                                                                     |                                                                                                                                    
ctctATTCCAGTGACACAATTGCGCCTAATTAATTACATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCt                                                                                                                                >  2:956940/1‑140 (MQ=255)
ctctATTCCAGTGACACAATTGCGCCTAATTAATTACATCTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCt                                                                                                                                >  2:503469/1‑140 (MQ=255)
          gTGACACAATTGCGCCTAATTAATTACATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTc                                                                                                                      >  2:875898/1‑140 (MQ=255)
          gTGACACAATTGCGCCTAATTAATTACATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTc                                                                                                                      >  2:687558/1‑140 (MQ=255)
               acaATTGCGCCTAATTAATTACATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGc                                                                                                                 >  1:384738/1‑140 (MQ=255)
                    tGCGCCTAATTAATTACATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATc                                                                                                            >  1:1152376/1‑140 (MQ=255)
                      cgcCTAATTAATTACATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATccc                                                                                                          <  1:956940/140‑1 (MQ=255)
                        ccTAATTAATTACATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTg                                                                                                        >  1:240552/1‑140 (MQ=255)
                           aattaattACATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCa                                                                                                     >  1:522291/1‑140 (MQ=255)
                                 ttaCATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTcc                                                                                               >  2:1007664/1‑140 (MQ=255)
                                  taCATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCa                                                                                              <  1:161155/140‑1 (MQ=255)
                                  taCATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCa                                                                                              <  1:259734/140‑1 (MQ=255)
                                  taCATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCa                                                                                              <  2:294715/140‑1 (MQ=255)
                                  taCATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCa                                                                                              <  1:687558/140‑1 (MQ=255)
                                  taCATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCa                                                                                              <  1:572833/140‑1 (MQ=255)
                                  taCATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCa                                                                                              <  1:437850/140‑1 (MQ=255)
                                    cATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATg                                                                                            <  1:295872/140‑1 (MQ=255)
                                    cATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTAAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATg                                                                                            <  2:863718/140‑1 (MQ=255)
                                     atttaatatttaatTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCa                                                                                              <  1:291277/137‑1 (MQ=255)
                                     atttaatatttaatTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCa                                                                                              >  2:291277/1‑137 (MQ=255)
                                      tttaatatttaatTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCa                                                                                              <  2:606705/136‑1 (MQ=255)
                                      tttaatatttaatTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGat                                                                                          <  1:875898/140‑1 (MQ=255)
                                      tttaatatttaatTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGat                                                                                          <  1:1112125/140‑1 (MQ=255)
                                       ttaatatttaatTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCa                                                                                              <  2:1153584/135‑1 (MQ=255)
                                       ttaatatttaatTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGata                                                                                         <  2:240552/140‑1 (MQ=255)
                                               taatTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATg                                                                                            <  2:715643/129‑1 (MQ=255)
                                                     tGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCtt                                                                           >  1:974709/1‑140 (MQ=255)
                                                     tGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCtt                                                                           >  2:42426/1‑140 (MQ=255)
                                                       aGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCa                                                                         >  2:844112/1‑140 (MQ=255)
                                                        gTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCaa                                                                        <  2:906218/140‑1 (MQ=255)
                                                        gTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCaa                                                                        <  1:410263/140‑1 (MQ=255)
                                                           ccTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAg                                                                     >  2:799015/1‑140 (MQ=255)
                                                            cTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCaa                                                                        <  2:673962/136‑1 (MQ=255)
                                                            cTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCaa                                                                        >  1:673962/1‑136 (MQ=255)
                                                                  aTCTATTACATTCTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACa                                                              <  2:273725/140‑1 (MQ=255)
                                                                    cTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACAtt                                                            >  1:150026/1‑140 (MQ=255)
                                                                         aCATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTa                                                       <  1:29159/140‑1 (MQ=255)
                                                                         aCATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTa                                                       <  1:503469/140‑1 (MQ=255)
                                                                           aTACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTa                                                       >  2:840606/1‑138 (MQ=255)
                                                                           aTACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTa                                                       <  1:840606/138‑1 (MQ=255)
                                                                             aCTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTaaaaa                                                   >  2:769899/1‑140 (MQ=255)
                                                                             aCTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTaaaaa                                                   >  2:1077265/1‑140 (MQ=255)
                                                                             aCTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTaaaaa                                                   >  2:389059/1‑140 (MQ=255)
                                                                              cTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAg                                                  <  1:769899/140‑1 (MQ=255)
                                                                               tttttAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGt                                                 >  2:898709/1‑140 (MQ=255)
                                                                                 tttAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGGTATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTaa                                               >  1:129006/1‑140 (MQ=255)
                                                                                 tttAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTaa                                               >  1:439442/1‑140 (MQ=255)
                                                                                 tttAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTaa                                               <  2:1014311/140‑1 (MQ=255)
                                                                                 tttAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTaa                                               >  2:1092349/1‑140 (MQ=255)
                                                                                 tttAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTaa                                               >  2:1104455/1‑140 (MQ=255)
                                                                                 tttAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTaa                                               >  2:1166579/1‑140 (MQ=255)
                                                                                 tttAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTaa                                               >  2:656997/1‑140 (MQ=255)
                                                                                 tttAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTaa                                               >  1:130208/1‑140 (MQ=255)
                                                                                      ccATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCtt                                          <  1:389059/140‑1 (MQ=255)
                                                                                      ccATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCtt                                          <  1:1104455/140‑1 (MQ=255)
                                                                                        atatCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTa                                        <  2:35143/140‑1 (MQ=255)
                                                                                        atatCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTa                                        <  2:370777/140‑1 (MQ=255)
                                                                                        atatCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTa                                        <  1:799015/140‑1 (MQ=255)
                                                                                        atatCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTa                                        <  1:380718/140‑1 (MQ=255)
                                                                                        atatCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTa                                        <  1:593187/140‑1 (MQ=255)
                                                                                        atatCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTa                                        <  2:1111305/140‑1 (MQ=255)
                                                                                         tatCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTaa                                               <  2:640815/132‑1 (MQ=255)
                                                                                         tatCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTaa                                               >  1:640815/1‑132 (MQ=255)
                                                                                         tatCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCttt                                         >  1:91557/1‑138 (MQ=255)
                                                                                         tatCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCttt                                         <  2:91557/138‑1 (MQ=255)
                                                                                         tatCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTAt                                       >  2:586233/1‑140 (MQ=255)
                                                                                         tatCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTAt                                       >  2:265520/1‑140 (MQ=255)
                                                                                           tCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTg                                     <  2:392347/140‑1 (MQ=255)
                                                                                           tCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTg                                     <  2:395538/140‑1 (MQ=255)
                                                                                             ggAATATTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCt                                   <  1:123566/140‑1 (MQ=255)
                                                                                                  atTTATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCtatata                              <  1:656997/140‑1 (MQ=255)
                                                                                                    ttATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATc                            <  1:586233/140‑1 (MQ=255)
                                                                                                     tATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTa                                        >  1:725758/1‑127 (MQ=255)
                                                                                                     tATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTa                                        <  2:725758/127‑1 (MQ=255)
                                                                                                     tATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCg                           >  1:928357/1‑140 (MQ=255)
                                                                                                     tATCATAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCg                           >  2:937775/1‑140 (MQ=255)
                                                                                                         aTAATCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCaga                       <  2:439442/140‑1 (MQ=255)
                                                                                                           aaTCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAgaga                     >  1:1053293/1‑140 (MQ=255)
                                                                                                           aaTCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAgaga                     >  1:973158/1‑140 (MQ=255)
                                                                                                            aTCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGAc                    <  1:898709/140‑1 (MQ=255)
                                                                                                             tCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGAc                    <  2:737828/139‑1 (MQ=255)
                                                                                                             tCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGAc                    >  1:737828/1‑139 (MQ=255)
                                                                                                             tCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACa                   >  1:871504/1‑140 (MQ=255)
                                                                                                             tCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACa                   >  2:892131/1‑140 (MQ=255)
                                                                                                             tCAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACa                   <  1:937775/140‑1 (MQ=255)
                                                                                                              cAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACaa                  >  1:712079/1‑140 (MQ=255)
                                                                                                              cAGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACaa                  >  2:36468/1‑140 (MQ=255)
                                                                                                               aGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAAc                 <  2:61025/140‑1 (MQ=255)
                                                                                                               aGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAAc                 <  1:119885/140‑1 (MQ=255)
                                                                                                               aGCGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAAc                 <  1:1092349/140‑1 (MQ=255)
                                                                                                                 cGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCg                           >  2:233952/1‑128 (MQ=255)
                                                                                                                 cGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCg                           <  1:233952/128‑1 (MQ=255)
                                                                                                                 cGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCt               <  1:1077265/140‑1 (MQ=255)
                                                                                                                 cGGGATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCt               >  1:649823/1‑140 (MQ=255)
                                                                                                                   ggATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCa             <  2:449940/140‑1 (MQ=255)
                                                                                                                   ggATTCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCa             <  2:973158/140‑1 (MQ=255)
                                                                                                                       tCGTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAatat         <  1:80612/140‑1 (MQ=255)
                                                                                                                         gTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATca       <  2:522291/140‑1 (MQ=255)
                                                                                                                         gTAACAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATca       <  1:563223/140‑1 (MQ=255)
                                                                                                                             cAATATATCTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACt   <  2:712079/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                    
CTCTATTCCAGTGACACAATTGCGCCTAATTAATTACATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTC  >  NC_000913/2011184‑2011449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: