BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,078,628	Δ1 bp	coding (232/1389 nt)	cmtA ←	mannitol‑specific PTS enzyme IICB component CmtA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,078,625	0	C	.	100.0%	605.8 / NA	140	coding (235/1389 nt)	cmtA	mannitol‑specific PTS enzyme IICB component CmtA
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (73/67); total (73/67)

Only 100 of 144 total aligned reads displayed.

GCAGGTATGCGTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCGCCCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACGCAGTAAT  >  NC_000913/3078486‑3078760

 cAGGTATGCGTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCGcc                                                                                                                                        <  1:1019377/140‑1 (MQ=255)

           tttttCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTAcc                                                                                                                             >  2:827703/1‑140 (MQ=255)

               tCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTAccgccg                                                                                                                         <  1:556783/140‑1 (MQ=255)

               tCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTAccgccg                                                                                                                         <  2:1698669/140‑1 (MQ=255)

                  aGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGAcc                                                                                                                      <  2:1314213/140‑1 (MQ=255)

                      ccTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTAccg                                                                                                                            <  2:1738030/130‑1 (MQ=255)

                      ccTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTAccg                                                                                                                            >  1:1738030/1‑130 (MQ=255)

                      ccTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGAt                                                                                                                  >  2:1834502/1‑140 (MQ=255)

                         tATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGac                                                                                                               <  1:1464707/140‑1 (MQ=255)

                          aTCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGacc                                                                                                              <  1:1168459/140‑1 (MQ=255)

                          aTCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGacc                                                                                                              <  1:744450/140‑1 (MQ=255)

                          aTCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGacc                                                                                                              <  1:1010826/140‑1 (MQ=255)

                          aTCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGacc                                                                                                              <  2:1508503/140‑1 (MQ=255)

                           tCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGacca                                                                                                             <  1:337062/140‑1 (MQ=255)

                            cGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGaccac                                                                                                            <  2:1031299/140‑1 (MQ=255)

                            cGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGaccac                                                                                                            <  2:1835207/140‑1 (MQ=255)

                              aCATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCt                                                                                                          >  2:1281719/1‑140 (MQ=255)

                               cATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTg                                                                                                         <  2:1896156/140‑1 (MQ=255)

                                  atTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACAGCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAg                                                                                                      <  1:1748464/140‑1 (MQ=255)

                                   ttttATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGa                                                                                                     <  2:55328/140‑1 (MQ=255)

                                        tGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCaa                                                                                                >  1:202874/1‑140 (MQ=255)

                                         gACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAat                                                                                               >  2:952463/1‑140 (MQ=255)

                                         gACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAat                                                                                               >  2:584408/1‑140 (MQ=255)

                                             aaCCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAatcatc                                                                                           >  1:1653300/1‑140 (MQ=255)

                                             aaCCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAatcatc                                                                                           >  1:970110/1‑140 (MQ=255)

                                              aCCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAAtcatca                                                                                          <  1:553782/140‑1 (MQ=255)

                                              aCCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAAtcatca                                                                                          >  2:652011/1‑140 (MQ=255)

                                              aCCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAAtcatca                                                                                          >  2:585153/1‑140 (MQ=255)

                                              aCCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAAtcatca                                                                                          <  1:1279/140‑1 (MQ=255)

                                               cccACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCAc                                                                                         <  2:638419/140‑1 (MQ=255)

                                               cccACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCAc                                                                                         <  2:1614896/140‑1 (MQ=255)

                                               cccACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCAc                                                                                         <  2:695610/140‑1 (MQ=255)

                                                ccACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACg                                                                                        <  2:257179/140‑1 (MQ=255)

                                                  aCCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACggg                                                                                      <  2:661070/140‑1 (MQ=255)

                                                  aCCGAGCGGCCCCATGATCATTAAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACggg                                                                                      <  1:1305410/140‑1 (MQ=255)

                                                   ccGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGc                                                                                     <  2:1415293/140‑1 (MQ=255)

                                                    cGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCa                                                                                    >  2:744735/1‑140 (MQ=255)

                                                    cGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCa                                                                                    >  2:1016667/1‑140 (MQ=255)

                                                       gCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCaata                                                                                 <  1:1188974/140‑1 (MQ=255)

                                                       gCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCACGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCaata                                                                                 <  1:1269676/140‑1 (MQ=255)

                                                        cGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCaataa                                                                                >  2:382599/1‑140 (MQ=255)

                                                         ggCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCaataaa                                                                               <  1:1328204/140‑1 (MQ=255)

                                                          gCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCaataaat                                                                              <  2:1202986/140‑1 (MQ=255)

                                                          gCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCaataaat                                                                              <  2:122355/140‑1 (MQ=255)

                                                                   tCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAatca                                                                     <  1:1445244/140‑1 (MQ=255)

                                                                     aTTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAatcatc                                                                   >  1:707462/1‑140 (MQ=255)

                                                                     aTTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAatcatc                                                                   >  1:921412/1‑140 (MQ=255)

                                                                     aTTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAatcatc                                                                   >  1:377068/1‑140 (MQ=255)

                                                                         aGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGc                                                               >  2:239659/1‑140 (MQ=255)

                                                                         aGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGc                                                               >  1:359366/1‑140 (MQ=255)

                                                                           ccAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCg                                                             >  1:1112046/1‑140 (MQ=255)

                                                                            cAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATATATAGGTAATCATCGGGCCGa                                                            <  1:655216/140‑1 (MQ=255)

                                                                            cAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGa                                                            >  1:1830204/1‑140 (MQ=255)

                                                                              aGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACa                                                          >  2:331730/1‑140 (MQ=255)

                                                                              aGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACa                                                          >  1:964000/1‑140 (MQ=255)

                                                                                 aaCATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAAtt                                                       <  2:1043166/140‑1 (MQ=255)

                                                                                   cATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAAtttt                                                     >  2:342180/1‑140 (MQ=255)

                                                                                        ggATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGa                                                >  1:1824392/1‑140 (MQ=255)

                                                                                           tctcTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAAt                                             >  1:1896190/1‑140 (MQ=255)

                                                                                                      aCGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAgg                                   <  1:1593110/139‑1 (MQ=255)

                                                                                                       cGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCa                                 >  2:1149778/1‑140 (MQ=255)

                                                                                                       cGATCACACCAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCa                                 >  2:245931/1‑140 (MQ=255)

                                                                                                                cAATAGTACCTATTCCGCCCATGTCCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTTGTTAGGCAGCCAACCgg                        <  2:1824392/140‑1 (MQ=255)

                                                                                                                cAATAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCgg                        <  1:1203118/140‑1 (MQ=255)

                                                                                                                 aaTAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGt                       <  2:359366/140‑1 (MQ=255)

                                                                                                                 aaTAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGt                       >  1:734074/1‑140 (MQ=255)

                                                                                                                  aTAGTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTg                      <  1:239659/140‑1 (MQ=255)

                                                                                                                     gTACCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGa                   <  1:584408/140‑1 (MQ=255)

                                                                                                                       aCCTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGaat                 <  2:734074/140‑1 (MQ=255)

                                                                                                                        ccTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGaata                >  2:1551888/1‑140 (MQ=255)

                                                                                                                        ccTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGaata                >  1:353102/1‑140 (MQ=255)

                                                                                                                        ccTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGaata                >  1:38040/1‑140 (MQ=255)

                                                                                                                        ccTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGaata                >  2:538490/1‑140 (MQ=255)

                                                                                                                        ccTATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGaata                >  1:655859/1‑140 (MQ=255)

                                                                                                                          tATTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGaataaa              >  1:1554586/1‑140 (MQ=255)

                                                                                                                           aTTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGaataaat             >  2:597467/1‑140 (MQ=255)

                                                                                                                           aTTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGaataaat             >  1:1637083/1‑140 (MQ=255)

                                                                                                                           aTTCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGaataaat             >  1:880448/1‑140 (MQ=255)

                                                                                                                            ttCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGaataaata            >  2:1863420/1‑140 (MQ=255)

                                                                                                                             tCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAataaataa           >  1:588768/1‑140 (MQ=255)

                                                                                                                             tCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAataaataa           >  2:1723802/1‑140 (MQ=255)

                                                                                                                             tCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAataaataa           <  2:1637083/140‑1 (MQ=255)

                                                                                                                             tCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAataaataa           >  1:499863/1‑140 (MQ=255)

                                                                                                                             tCCGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGT‑ATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAAc          >  2:424123/1‑140 (MQ=255)

                                                                                                                               cGCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACg         <  2:964000/140‑1 (MQ=255)

                                                                                                                                gCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACGc        >  1:151009/1‑140 (MQ=255)

                                                                                                                                gCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACGc        <  1:322920/140‑1 (MQ=255)

                                                                                                                                gCCCATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACGc        >  1:1026956/1‑140 (MQ=255)

                                                                                                                                 cccATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACGCa       >  1:1165324/1‑140 (MQ=255)

                                                                                                                                 cccATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGATAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACGCa       <  1:569181/140‑1 (MQ=255)

                                                                                                                                  ccATGACCG‑CCCGCGTTTACCGCGGGCCAGATGGCCACCTGTAGTTCCAATCATCACCCGTCAGAAAGAGGGAATCATCGGGCCGACAATCTTGGCGCAACGTTCGGTAGGCAGCCAACCCGTGCGAATAAATAACGCAg      >  2:1384858/1‑140 (MQ=255)

                                                                                                                                  ccATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACGCAg      >  2:368899/1‑140 (MQ=255)

                                                                                                                                  ccATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACGCAg      <  1:1251910/140‑1 (MQ=255)

                                                                                                                                  ccATGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACGCAg      <  2:921412/140‑1 (MQ=255)

                                                                                                                                    aTGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGaat                 >  2:148482/1‑127 (MQ=255)

                                                                                                                                    aTGACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACGCAGta    >  2:1220113/1‑140 (MQ=255)

                                                                                                                                      gACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGTCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACGCAGtaat  >  2:1803917/1‑140 (MQ=255)

                                                                                                                                      gACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACGCAGtaat  >  2:375737/1‑140 (MQ=255)

                                                                                                                                      gACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACGCAGtaat  >  1:1052356/1‑140 (MQ=255)

                                                                                                                                      gACCG‑CCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACGCAGtaat  >  1:604134/1‑140 (MQ=255)

GCAGGTATGCGTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCGCCCCGCGTTTACCGCCGACCAGATGACCACCTGTAGAACCAATCATCACGGGCAATAAATAGGTAATCATCGGGCCGACAATTTTGGCGAAATGTTCGTTAGGCAGCCAACCGGTGGGAATAAATAACGCAGTAAT  >  NC_000913/3078486‑3078760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`