Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,094,861	Δ15 bp	coding (1108‑1122/1260 nt)	rhaA ←	L‑rhamnose isomerase

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4094861	4094875	15	85 [0]	[0] 86	rhaA	L‑rhamnose isomerase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4094860	0 (0.000)	85 (0.760)	58/278	0.5	100%	coding (1123/1260 nt)	rhaA	L‑rhamnose isomerase
	?	NC_000913	4094876 =	0 (0.000)					coding (1107/1260 nt)	rhaA	L‑rhamnose isomerase

TACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCAGGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGG  >  NC_000913/4094724‑4094994                                                                                                                                         |                                                                                                                                       tACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgta                                                                                                                                     >  2:1180327‑M1/1‑137 (MQ=255)     cgcgGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTCCCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcg                                                                                                                                 <  2:1641560‑M1/140‑8 (MQ=255)       cggcgACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcc                                                                                                                               >  2:180158‑M1/1‑131 (MQ=255)       cgacgactCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGCTTTCTGCTCTTCCAGCAGgtaatcgcc                                                                                                                               >  2:740086‑M1/4‑131 (MQ=255)         gcgACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTCCCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGAATTCTGCTCTTCCAGCAGgtaatcgcccg                                                                                                                             <  2:783206‑M1/140‑12 (MQ=255)         gcgACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccg                                                                                                                             >  1:719673‑M1/1‑129 (MQ=255)         gcgACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccg                                                                                                                             >  1:1165929‑M1/1‑129 (MQ=255)          cgACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgc                                                                                                                            <  1:148551‑M1/140‑13 (MQ=255)          cgACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTCCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgc                                                                                                                            <  2:942715‑M1/140‑13 (MQ=255)                       ttttctcATAAGCCCGCCCGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttg                                                                                                               <  2:479296‑M1/139‑26 (MQ=255)                          tctcATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgc                                                                                                            >  2:1668420‑M1/1‑112 (MQ=255)                            tcATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcag                                                                                                          <  1:16191‑M1/140‑31 (MQ=255)                             cATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagc                                                                                                         <  2:1642708‑M1/140‑32 (MQ=255)                              aTAAGCCCGCACGCTCTCCAGCCATTCGCTCCCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagct                                                                                                        <  2:305420‑M1/140‑33 (MQ=255)                              aTAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGCCCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagct                                                                                                        <  2:780858‑M1/140‑33 (MQ=255)                              aTAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagct                                                                                                        <  1:897125‑M1/140‑33 (MQ=255)                                 aGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcag                                                                                                     <  1:565679‑M1/140‑36 (MQ=255)                                    ccGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcgg                                                                                                  <  1:1187173‑M1/140‑39 (MQ=255)                                      gCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggta                                                                                                >  2:1758840‑M1/1‑100 (MQ=255)                                             ctcCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttcca                                                                                         <  1:127605‑M1/140‑48 (MQ=255)                                                     aTTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgca                                                                                 <  2:1124807‑M1/140‑56 (MQ=255)                                                     aTTCGCTACCTGCGGGCGTATCGTGACGTTGGCAATCCATTTCCCAGACCCCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgca                                                                                 <  2:171002‑M1/140‑56 (MQ=255)                                                      ttCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcac                                                                                >  2:1709762‑M1/1‑84 (MQ=255)                                                      ttCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcac                                                                                >  2:352099‑M1/1‑84 (MQ=255)                                                      ttCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcac                                                                                >  1:976962‑M1/1‑84 (MQ=255)                                                      ttCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggtccagcaacgcacg                                                                                >  2:1746432‑M1/1‑84 (MQ=255)                                                        cGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgc                                                                              >  2:1878243‑M1/1‑82 (MQ=255)                                                        cGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgc                                                                              >  2:1813265‑M1/1‑82 (MQ=255)                                                        cGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgc                                                                              >  2:978661‑M1/1‑82 (MQ=255)                                                          cTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcag                                                                            <  2:596084‑M1/140‑61 (MQ=255)                                                             ccTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcag                                                                         <  1:1761246‑M1/140‑64 (MQ=255)                                                                gctgGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggc                                                                      <  2:404709‑M1/140‑67 (MQ=255)                                                                gctgGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggc                                                                      >  1:904256‑M1/1‑74 (MQ=255)                                                                gctgGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggc                                                                      <  2:686455‑M1/140‑67 (MQ=255)                                                                  tgGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggctt                                                                    <  2:1245171‑M1/140‑69 (MQ=255)                                                                  tgGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggctt                                                                    <  1:1017259‑M1/140‑69 (MQ=255)                                                                    gCGTATCGTGACGTTGGCAATCCATTCCCCAGACCCCCTGCCACGGCAACGATTTCTGCCCTTCCAGGAGgtaatcccccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggctttt                                                                  <  1:740086‑M1/140‑71 (MQ=255)                                                                     cGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttt                                                                 >  2:908495‑M1/1‑69 (MQ=255)                                                                          cgggacgTTGGCAATACATTTCCCAGTCCGCCTGCCGCGGCAACGATTTCTGCCCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcata                                                            <  2:976962‑M1/137‑77 (MQ=255)                                                                          cGTGGCGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCACCGATTTCTGCTCTGCCAGCGGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcata                                                            <  2:1145563‑M1/140‑77 (MQ=255)                                                                          cGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgaccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcata                                                            <  1:158448‑M1/140‑77 (MQ=255)                                                                           gTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatat                                                           >  1:616517‑M1/1‑63 (MQ=255)                                                                            tGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatatt                                                          <  2:1228845‑M1/140‑79 (MQ=255)                                                                            tGACGTGGGCAATACATTTCCCAGCCCGCCTGCCCCGGCAACGATTTCTGCTTTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatatt                                                          <  2:1165929‑M1/140‑79 (MQ=255)                                                                            ggaCGTTGGCAATACATTCCCCAGCCCGCCTGCCACGGCAACGTTTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatatt                                                          <  2:235531‑M1/139‑79 (MQ=255)                                                                              aCGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgc                                                        <  1:1813265‑M1/140‑81 (MQ=255)                                                                              aCGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgc                                                        >  2:795835‑M1/1‑60 (MQ=255)                                                                                 ttGGCATTACTTTTCCCAGCCCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtg                                                     <  2:310084‑M1/140‑84 (MQ=255)                                                                                 ttGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtg                                                     <  1:908495‑M1/140‑84 (MQ=255)                                                                                 ttGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtg                                                     <  1:1758840‑M1/140‑84 (MQ=255)                                                                                 ttGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtg                                                     <  1:1668420‑M1/140‑84 (MQ=255)                                                                                 ttGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtg                                                     <  1:1674704‑M1/140‑84 (MQ=255)                                                                                      aaTACATTCCCCAGCCCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtacca                                                <  2:1339078‑M1/140‑89 (MQ=255)                                                                                           aTTTCCCAGACCGCCTGCCACGGCAACGATTTCTGGTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgac                                           >  1:1190373‑M1/1‑47 (MQ=255)                                                                                           aTTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgac                                           >  2:1660752‑M1/1‑47 (MQ=255)                                                                                                  accccgccTGCCACGGAAGTGTTTTCTGCTCTTCCAGCAGgtaaccgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcg                                    <  2:422039‑M1/137‑101 (MQ=255)                                                                                                  aGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcg                                    >  1:796041‑M1/1‑40 (MQ=255)                                                                                                   gACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcgg                                   <  2:1736850‑M1/140‑102 (MQ=255)                                                                                                   gACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcgg                                   <  2:796041‑M1/140‑102 (MQ=255)                                                                                                    aCCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggc                                  >  2:95405‑M1/1‑38 (MQ=255)                                                                                                    aCCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggc                                  >  1:422039‑M1/1‑38 (MQ=255)                                                                                                      cGCCTGCCACGGCAACGTTTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaa                                <  2:1404592‑M1/140‑105 (MQ=255)                                                                                                       gCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaat                               <  2:719673‑M1/140‑106 (MQ=255)                                                                                                        ccTGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatg                              >  1:1828723‑M1/1‑34 (MQ=255)                                                                                                          tGCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcg                            <  2:173665‑M1/140‑109 (MQ=255)                                                                                                           gCCACGGCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcgg                           <  1:1310313‑M1/140‑110 (MQ=255)                                                                                                                ggCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgat                      >  1:1199026‑M1/1‑26 (MQ=255)                                                                                                                 gCAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgata                     <  1:1709762‑M1/140‑116 (MQ=255)                                                                                                                  cAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgatag                    >  2:5231‑M1/1‑24 (MQ=255)                                                                                                                  cAACGATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgatag                    <  2:128119‑M1/140‑117 (MQ=255)                                                                                                                      gATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgatagaggc                <  1:1878243‑M1/140‑121 (MQ=255)                                                                                                                      gATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgatagaggc                >  2:179021‑M1/1‑20 (MQ=255)                                                                                                                      gATTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgatagaggc                <  1:795835‑M1/140‑121 (MQ=255)                                                                                                                       aTTTCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgatagaggca               <  2:203606‑M1/140‑122 (MQ=255)                                                                                                                       aTTTATGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggtccagcaacgcacgcagcagggctgttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgatagaggcat               <  1:1746432‑M1/140‑122 (MQ=255)                                                                                                                          tCTGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgatagaggcatcg            <  1:95405‑M1/140‑125 (MQ=255)                                                                                                                            tGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgatagaggcatcgaa          <  1:978661‑M1/140‑127 (MQ=255)                                                                                                                            tGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcg                            >  2:351445‑M1/1‑14 (MQ=255)                                                                                                                            tGCTCTTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcg                            <  1:351445‑M1/122‑109 (MQ=255)                                                                                                                              ctctTCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgatagaggcatcgaaga        >  1:739347‑M1/1‑12 (MQ=255)                                                                                                                                 ttCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgatagaggcatcgaagaagt     <  1:5231‑M1/140‑132 (MQ=255)                                                                                                                                 ttCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgatagaggcatcgaagaagt     >  2:997109‑M1/1‑9 (MQ=255)                                                                                                                                 tcccagCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgatagaggcatcgaagaagt     <  1:747790‑M1/138‑132 (MQ=255)                                                                                                                                  tCCAGCAGgtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgatagaggcatcgaagaagtc    >  1:1234197‑M1/1‑8 (MQ=255)                                                                                                                                    cagcaggtaatcgcccgccgcttccagcttgcgcagctcagcggtaggttccagcaacgcacgcagcagggcttttttcatattgcgtgtaccaatgacccacgcggcaatgcggttgatagaggcatcgaagaagtcaa  <  1:352099‑M1/140‑135 (MQ=255)                                                                                                                                         |                                                                                                                                       TACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCAGGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGG  >  NC_000913/4094724‑4094994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑