BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4542690	64 (0.560)	33 (0.310)	30/258	2.4	35.1%	intergenic (+57/‑425)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
*	?	NC_000913	= 4542986	62 (0.580)	33 (0.310)	30/258	2.4	35.1%	intergenic (+353/‑129)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit

Only 100 of 104 total aligned reads displayed.

CCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAA  >  NC_000913/4542551‑4542829

ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCA                                                                                                                                             >  2:182279‑M1/1‑140 (MQ=255)

ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCA                                                                                                                                             <  1:246032‑M1/140‑1 (MQ=255)

 cGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCaa                                                                                                                                            >  1:108858/1‑140 (MQ=255)

  gCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                           <  2:468345/140‑1 (MQ=255)

  gCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                           <  2:433794/140‑1 (MQ=255)

  gCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                           <  2:232614/140‑1 (MQ=255)

  gCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                           <  2:108858/140‑1 (MQ=255)

  gCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                           <  2:686532/140‑1 (MQ=255)

  gCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                           <  2:776001/140‑1 (MQ=255)

  gCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                           <  1:326489/140‑1 (MQ=255)

   ccAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc                                                                                                                                          >  1:121819/1‑140 (MQ=255)

   ccAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc                                                                                                                                          >  1:1814900/1‑140 (MQ=255)

   ccAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGATTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGTGGCCAAAc                                                                                                                                          >  2:1062971/1‑140 (MQ=255)

    cAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt                                                                                                                                         <  1:1452696/140‑1 (MQ=255)

       tAATGCTGCTCGTTTTGCTGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgac                                                                                                                                      <  2:219557‑M1/140‑8 (MQ=255)

        aaTGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc                                                                                                                                     <  1:1410775/140‑1 (MQ=255)

        aaTGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc                                                                                                                                     <  2:862965/140‑1 (MQ=255)

        aaTGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc                                                                                                                                     <  1:182279/140‑1 (MQ=255)

          tgctgcTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactca                                                                                                                                   <  1:1130800‑M1/140‑11 (MQ=255)

            ctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcata                                                                                                                                 <  2:1100393‑M1/140‑13 (MQ=255)

            ctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat                                                                                                                                 >  1:989646/1‑140 (MQ=255)

             tgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc                                                                                                                                <  1:1894330/140‑1 (MQ=255)

               ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagag                                                                                                                              >  2:1857655‑M1/1‑125 (MQ=255)

               ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagag                                                                                                                              >  2:312180‑M1/1‑125 (MQ=255)

               ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc                                                                                                                                     <  2:21250/133‑1 (MQ=255)

               ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc                                                                                                                                     >  1:21250/1‑133 (MQ=255)

               ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat                                                                                                                              >  1:1759282/1‑140 (MQ=255)

                 cGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagga                                                                                                                            <  1:870591‑M1/140‑18 (MQ=255)

                  gTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa                                                                                                                           >  1:1136668/1‑140 (MQ=255)

                   ttttGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaat                                                                                                                          <  2:702683/140‑1 (MQ=255)

                    tttGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaa                                                                                                                          >  2:592921‑M1/1‑121 (MQ=255)

                      tGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg                                                                                                                       >  2:1475372/1‑140 (MQ=255)

                       gCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcat                                                                                                                      <  1:1782558‑M1/140‑24 (MQ=255)

                        ccGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGtt                                                                                                                     <  1:1062971/140‑1 (MQ=255)

                            aTTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt                                                                                                                 >  2:82835/1‑140 (MQ=255)

                            aTTATGGGAAAGAAATAATCTCAT‑AACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTACTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgga                                                                                                                >  1:704802‑M1/1‑111 (MQ=255)

                                  ggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaac                                                                                                           >  1:47635‑M1/1‑106 (MQ=255)

                                     aagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct                                                                                                        <  1:1668136/140‑1 (MQ=255)

                                      agaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttt                                                                                                       >  2:435342‑M1/1‑102 (MQ=255)

                                      agaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc                                                                                                       >  2:1216532/1‑140 (MQ=255)

                                      agaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGCTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc                                                                                                       <  1:574681/140‑1 (MQ=255)

                                       gaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCa                                                                                                      <  1:1717857/140‑1 (MQ=255)

                                                tcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaa                                                                                             <  1:894273/140‑1 (MQ=255)

                                                  aTAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGTTAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat                                                                                           >  1:814400/1‑140 (MQ=255)

                                                  aTAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttg                                                                                           >  2:1273346‑M1/1‑90 (MQ=255)

                                                  aTAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTC‑AGCATAAAAata                                                                                          >  2:415016/1‑140 (MQ=255)

                                                   tAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttg                                                                                           <  1:592921‑M1/140‑51 (MQ=255)

                                                        gAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggct                                                                                     <  1:435342‑M1/140‑57 (MQ=255)

                                                          aaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaa                                                                                   >  2:257147/1‑140 (MQ=255)

                                                            aaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc                                                                                 >  2:1182786/1‑140 (MQ=255)

                                                             aTTAAAAAGAGAAGAGGTTTGATTTAACTTACTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaata                                                                                <  2:704802‑M1/140‑62 (MQ=255)

                                                               tAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatatt                                                                              <  1:1273346‑M1/140‑64 (MQ=255)

                                                               tAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatatt                                                                              <  1:312180‑M1/140‑64 (MQ=255)

                                                                  aaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattcta                                                                           <  1:326705‑M1/140‑67 (MQ=255)

                                                                    agagaagagGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaaa                                                                         <  2:1759282/140‑1 (MQ=255)

                                                                      agaagagGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACATATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaata                                                                                <  1:806277‑M1/131‑62 (MQ=255)

                                                                      agaagagGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACATATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaata                                                                                >  2:806277‑M1/1‑70 (MQ=255)

                                                                       gaagagGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgtt                                                                      >  2:1878176‑M1/1‑69 (MQ=255)

                                                                        aagagGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCAt                                                                     <  2:1031582/140‑1 (MQ=255)

                                                                          gagGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCt                                                                   <  2:1814900/140‑1 (MQ=255)

                                                                           agGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTa                                                                  <  1:1776629/140‑1 (MQ=255)

                                                                            ggTTTGATTTAACTTATTGTTAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                 <  2:814400/140‑1 (MQ=255)

                                                                            ggTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                 <  2:589159/140‑1 (MQ=255)

                                                                            ggTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                 <  1:1216532/140‑1 (MQ=255)

                                                                            ggTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                 <  1:1182645/140‑1 (MQ=255)

                                                                                tGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatt                                                             >  2:1791422‑M1/1‑60 (MQ=255)

                                                                                tGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGt                                                             >  1:1569846/1‑140 (MQ=255)

                                                                                  aTTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttattta                                                           <  1:1791422‑M1/140‑83 (MQ=255)

                                                                                  aTTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttat                                                              >  2:389140‑M1/1‑58 (MQ=255)

                                                                                  aTTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttat                                                              <  1:389140‑M1/137‑80 (MQ=255)

                                                                                        cTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATg                                                     >  1:1207230/1‑140 (MQ=255)

                                                                                         ttATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttacagatgt                                                    <  1:874924‑M1/140‑90 (MQ=255)

                                                                                            ttGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTaaa                                                 >  2:1934264/1‑140 (MQ=255)

                                                                                             tGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAat                                                >  1:1181155/1‑140 (MQ=255)

                                                                                                 aataaAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattg                                            >  1:744268‑M1/1‑43 (MQ=255)

                                                                                                   taaAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTc                                          >  1:154285/1‑140 (MQ=255)

                                                                                                     aaGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatg                                        <  2:47635‑M1/140‑102 (MQ=255)

                                                                                                      aGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatga                                       >  2:518295‑M1/1‑38 (MQ=255)

                                                                                                                   aaataaatACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttgg                           >  2:368679‑M1/1‑26 (MQ=255)

                                                                                                                       aaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagag                       <  1:1857655‑M1/140‑119 (MQ=255)

                                                                                                                            cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAc                  <  1:1934264/140‑1 (MQ=255)

                                                                                                                             aaGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAcc                 >  2:215775/1‑140 (MQ=255)

                                                                                                                              aGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatg                <  2:744268‑M1/140‑126 (MQ=255)

                                                                                                                               gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTc               >  2:899943/1‑140 (MQ=255)

                                                                                                                               gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTc               >  2:1179304/1‑140 (MQ=255)

                                                                                                                               gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTc               >  2:1075160/1‑140 (MQ=255)

                                                                                                                               gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTc               >  1:713564/1‑140 (MQ=255)

                                                                                                                               gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTc               >  1:539684/1‑140 (MQ=255)

                                                                                                                                  aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGc            <  2:396304/140‑1 (MQ=255)

                                                                                                                                  aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGc            >  1:217891/1‑140 (MQ=255)

                                                                                                                                   aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCt           <  2:1569846/140‑1 (MQ=255)

                                                                                                                                   aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCt           <  1:899943/140‑1 (MQ=255)

                                                                                                                                   aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCt           <  2:891278/140‑1 (MQ=255)

                                                                                                                                    ttGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaag          >  2:1741791‑M1/1‑9 (MQ=255)

                                                                                                                                    ttGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaag          >  1:612342‑M1/1‑9 (MQ=255)

                                                                                                                                    ttGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCta          >  1:1603827/1‑140 (MQ=255)

                                                                                                                                     tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaaga         <  1:812651‑M1/140‑133 (MQ=255)

                                                                                                                                     tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaaga         >  1:1179304‑M1/1‑8 (MQ=255)

                                                                                                                                         gCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGt     >  1:982205/1‑140 (MQ=255)

                                                                                                                                            attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaagatgcgtcg  >  2:817970‑M1/1‑1 (MQ=255)

CCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAA  >  NC_000913/4542551‑4542829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.