Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,577,603 C→A intergenic (‑11/+128) gntK ← / ← gntR D‑gluconate kinase, thermostable/DNA‑binding transcriptional repressor GntR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,577,6030CA100.0% 184.8 / NA 53intergenic (‑11/+128)gntK/gntRD‑gluconate kinase, thermostable/DNA‑binding transcriptional repressor GntR
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (16/37);  total (16/37)

ATCGCCATCAAGAAACGCGGCATGAAGTTGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCCCACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCTTAAGTGTATAAGTGTGAGCTACTTCAAATTTG  >  NC_000913/3577473‑3577725
                                                                                                                                  |                                                                                                                          
aTCGCCATCAAGAAACGCGGCATGAAGTTGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACa                                                                                                                   >  2:71735/1‑140 (MQ=255)
 tCGCCATCAAGAAACGCGGCATGAAGTTGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACaa                                                                                                                  <  1:719451/140‑1 (MQ=255)
 tCGCCATCAAGAAACGCGGCATGAAGTTGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACaa                                                                                                                  <  1:191984/140‑1 (MQ=255)
     cATCAAGAAACGCGGCATGAAGTTGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAAt                                                                                                              >  1:1049446/1‑140 (MQ=255)
     cATCAAGAAACGCGGCATGAAGTTGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAAt                                                                                                              >  2:869672/1‑140 (MQ=255)
               cgcgGCATGAAGTTGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGtt                                                                                                    <  1:404872/140‑1 (MQ=255)
                      tGAAGTTGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTa                                                                                             <  2:22613/140‑1 (MQ=255)
                      tGAAGTTGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTAACGGGTa                                                                                             <  1:937544/140‑1 (MQ=255)
                       gAAGTTGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTaa                                                                                            <  1:46236/140‑1 (MQ=255)
                          gTTGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTg                                                                                         <  1:211313/140‑1 (MQ=255)
                          gTTGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTg                                                                                         <  1:810161/140‑1 (MQ=255)
                            tGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGtt                                                                                       <  1:1178502/140‑1 (MQ=255)
                            tGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGtt                                                                                       <  1:285204/140‑1 (MQ=255)
                            tGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGtt                                                                                       <  1:869672/140‑1 (MQ=255)
                            tGATGCGCCACTTAACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGtt                                                                                       <  2:622/140‑1 (MQ=255)
                                 cgcCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTTAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCgg                                                                                  <  1:636171/140‑1 (MQ=255)
                                   ccACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTa                                                                                >  2:537550/1‑140 (MQ=255)
                                     aCTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAAc                                                                              >  2:78335/1‑140 (MQ=255)
                                         cACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTg                                                                          <  1:310580/140‑1 (MQ=255)
                                                gACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGcc                                                                   >  2:989365/1‑140 (MQ=255)
                                                gACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGcc                                                                   >  1:202405/1‑140 (MQ=255)
                                                  ccGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCgg                                                                 <  1:923383/140‑1 (MQ=255)
                                                          ttGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATc                                                         <  1:300360/140‑1 (MQ=255)
                                                           tGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCa                                                        <  1:1044503/140‑1 (MQ=255)
                                                                    ccGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAata                                               <  1:78335/140‑1 (MQ=255)
                                                                     cGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAatat                                              <  2:202405/140‑1 (MQ=255)
                                                                     cGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAatat                                              <  1:537550/140‑1 (MQ=255)
                                                                          cGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGTGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATatccatc                                         <  1:416885/140‑1 (MQ=255)
                                                                          cGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATatccatc                                         <  1:1193693/140‑1 (MQ=255)
                                                                          cGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATatccatc                                         <  2:150050/140‑1 (MQ=255)
                                                                          cGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATatccatc                                         <  2:1049446/140‑1 (MQ=255)
                                                                            cccATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCAGACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATAtccatcca                                       <  2:941649/140‑1 (MQ=255)
                                                                             ccATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAg                                                       >  1:287941/1‑123 (MQ=255)
                                                                             ccATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAg                                                       <  2:287941/123‑1 (MQ=255)
                                                                             ccATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATccatccat                                      >  1:329576/1‑140 (MQ=255)
                                                                             ccATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATccatccat                                      >  1:52736/1‑140 (MQ=255)
                                                                                tCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGcc                                   <  1:703689/140‑1 (MQ=255)
                                                                                tCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGcc                                   >  2:570578/1‑140 (MQ=255)
                                                                                  aaGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCtt                                 <  1:376972/140‑1 (MQ=255)
                                                                                  aaGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCtt                                 <  2:52736/140‑1 (MQ=255)
                                                                                    gACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCTTaa                               <  2:102312/140‑1 (MQ=255)
                                                                                    gACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCTTaa                               <  2:232685/140‑1 (MQ=255)
                                                                                    gACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCTTaa                               <  2:567765/140‑1 (MQ=255)
                                                                                       gTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCTTAAgtg                            >  2:185232/1‑140 (MQ=255)
                                                                                          aaTGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCTTAAGTGtat                         <  1:185232/140‑1 (MQ=255)
                                                                                               ggtgATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCTTaa                               <  1:1223738/129‑1 (MQ=255)
                                                                                               ggtgATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCTTaa                               >  2:1223738/1‑129 (MQ=255)
                                                                                               ggtgATCATGGTTAGTCGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCTTAAGTGTATAAgtg                    >  1:306403/1‑140 (MQ=255)
                                                                                                               cGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCTTAAGTGTATAAGTGTGAGCTACTTCa        >  1:1068683/1‑136 (MQ=255)
                                                                                                               cGTGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCTTAAGTGTATAAGTGTGAGCTACTTCa        <  2:1068683/136‑1 (MQ=255)
                                                                                                                 tGCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCTTAAGTGTATAAGTGTGAGCTACTTCAAATTtg  <  1:499587/140‑1 (MQ=255)
                                                                                                                  gCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCTTAAGTGTATAAGTGTGAGCTACTTCAAATTtg  >  2:113202/1‑139 (MQ=255)
                                                                                                                  gCTCAAAGTGGTGCCCACACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCTTAAGTGTATAAGTGTGAGCTACTTCAAATTtg  <  1:113202/139‑1 (MQ=255)
                                                                                                                                  |                                                                                                                          
ATCGCCATCAAGAAACGCGGCATGAAGTTGATGCGCCACTTCACTGGCGACCGCAGATTTGCCGCTGCCCGATACGCCCATCAAGACGTAAATGTGGTGATCATGGTTAGTCGTGCTCAAAGTGGTGCCCCCACAATACAAGAATTAAAAATGTTACGGGTAACTGTTATCGGTAACATTGTCCAGCCGGACAATATCAGAAGCAATATCCATCCATGCCTTAAGTGTATAAGTGTGAGCTACTTCAAATTTG  >  NC_000913/3577473‑3577725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑