BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3363001 =	135 (1.290)	143 (1.380)	71/274	0.1	67.9%	coding (195/2382 nt)	yhcD	putative fimbrial usher protein YhcD
*	?	NC_000913	3766087 =	1 (0.010)	143 (1.380)	71/274	0.1	67.9%	coding (3905/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 284 total aligned reads displayed.

TGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362872‑3363140

tGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCg                                                                                                                                    >  1:223655/1‑140 (MQ=255)

tGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCg                                                                                                                                    >  2:1644708/1‑140 (MQ=255)

cctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCg                                                                                                                                    <  1:672193‑M1/11‑1 (MQ=255)

   gaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGaaa                                                                                                                                 <  1:1205313‑M1/14‑1 (MQ=255)

       gagaTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaaaaa                                                                                                                             >  2:1475871/1‑140 (MQ=255)

        acgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGaaaaaaaa                                                                                                                            >  1:944091‑M1/122‑140 (MQ=255)

          gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑gg                                                                                                                         >  1:847510‑M1/120‑140 (MQ=255)

          gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑gg                                                                                                                         >  2:1408810‑M1/120‑140 (MQ=255)

          aTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑gg                                                                                                                         <  1:247907/140‑1 (MQ=255)

            cacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCa                                                                                                                       <  2:553668‑M1/23‑1 (MQ=255)

             gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑gg                                                                                                                         <  1:1307881/137‑1 (MQ=255)

             gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCaa                                                                                                                      >  2:1703518/1‑140 (MQ=255)

             gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCaa                                                                                                                      >  1:1520026/1‑140 (MQ=255)

             gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCaa                                                                                                                      >  1:1577945/1‑140 (MQ=255)

             acatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCaa                                                                                                                      >  1:616874‑M1/117‑140 (MQ=255)

               atctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatgtctaAGTAAATGGCGAAAAAAAA‑GGCAACa                                                                                                                    >  1:289384‑M1/115‑140 (MQ=255)

                  tGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTg                                                                                                                 >  1:90544/1‑140 (MQ=255)

                         tttGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTAcgcg                                                                                                          <  1:502945/140‑1 (MQ=255)

                              tcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTtg                                                                                                     <  1:956123‑M1/41‑1 (MQ=255)

                              tcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTtg                                                                                                     >  2:672193‑M1/100‑140 (MQ=255)

                                      ctccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAAt                                                                                             >  1:1758739‑M1/92‑140 (MQ=255)

                                        ttAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATgg                                                                                           <  1:1703518/140‑1 (MQ=255)

                                         tAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGc                                                                                          <  1:1598319/140‑1 (MQ=255)

                                             aTCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACa                                                                                      <  1:1715890/140‑1 (MQ=255)

                                              tCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  2:1499134/140‑1 (MQ=255)

                                                 cTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  2:742320/137‑1 (MQ=255)

                                                   catttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTc                                                                                >  1:951510‑M1/79‑140 (MQ=255)

                                                       gtAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGa                                                                            <  1:1555596/140‑1 (MQ=255)

                                                        tAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGAt                                                                           <  2:1377941/140‑1 (MQ=255)

                                                           aTCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAg                                                                        >  1:73891/1‑140 (MQ=255)

                                                            tgtcattgacacgatcagttatccccgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       >  1:1408500‑M1/70‑140 (MQ=255)

                                                              tcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCa                                                                     >  1:1016228‑M1/68‑140 (MQ=255)

                                                               tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    >  2:288225/1‑140 (MQ=255)

                                                               tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    >  1:240990/1‑140 (MQ=255)

                                                                aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  1:1480964/122‑1 (MQ=255)

                                                                aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  2:583637/1‑140 (MQ=255)

                                                                 ttgacacgatcagttatccctgtgtctgcaacatttccacgagaagctgtcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       >  2:1189750‑M1/65‑135 (MQ=255)

                                                                 ttgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       <  1:1189750‑M1/71‑1 (MQ=255)

                                                                 ttgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAttt                                                                  <  2:1221753‑M1/76‑1 (MQ=255)

                                                                  tatatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTc                                                                 <  2:1140368/140‑1 (MQ=255)

                                                                       cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGTGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:1261771/1‑140 (MQ=255)

                                                                       cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:1575443/1‑140 (MQ=255)

                                                                       cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:966349/1‑140 (MQ=255)

                                                                       cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:1010422/1‑140 (MQ=255)

                                                                       cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:875115/1‑140 (MQ=255)

                                                                       cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:64251/1‑140 (MQ=255)

                                                                       cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:540023/1‑140 (MQ=255)

                                                                        gatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaac                                                           <  2:1674841‑M1/83‑1 (MQ=255)

                                                                        gatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaac                                                           <  2:829374‑M1/83‑1 (MQ=255)

                                                                        gatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaac                                                           <  1:441505‑M1/83‑1 (MQ=255)

                                                                         cATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGc                                                                      >  2:240767/1‑128 (MQ=255)

                                                                            tattTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       >  2:409916/1‑140 (MQ=255)

                                                                                   cctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAg                                                        <  1:1095676‑M1/86‑1 (MQ=255)

                                                                                   cctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                <  1:745143‑M1/94‑1 (MQ=255)

                                                                                   cccGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGTCATTTCTGCAACAAGCCGGTTTa                                                >  2:1397020/1‑140 (MQ=255)

                                                                                      gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:1165005‑M1/97‑1 (MQ=255)

                                                                                      gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:1353002‑M1/97‑1 (MQ=255)

                                                                                      gTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             >  2:1062359/1‑140 (MQ=255)

                                                                                      gTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             >  2:618802/1‑140 (MQ=255)

                                                                                       tgtctgcaaaatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaaa                                            <  2:338338‑M1/98‑1 (MQ=255)

                                                                                        gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCgg                                                    >  2:1115154‑M1/42‑132 (MQ=255)

                                                                                           tgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTcc                                        <  1:1529554‑M1/102‑1 (MQ=255)

                                                                                           tgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTcc                                        <  1:782570‑M1/102‑1 (MQ=255)

                                                                                                ttttttGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTg                                   >  1:546634/1‑140 (MQ=255)

                                                                                                 atttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTga                                  <  2:1365566‑M1/108‑1 (MQ=255)

                                                                                                   tttGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                <  2:875115/140‑1 (MQ=255)

                                                                                                   ttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                <  2:1240748‑M1/110‑1 (MQ=255)

                                                                                                          ggTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaaaaaa                         >  1:311796/1‑140 (MQ=255)

                                                                                                            aagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATg                       >  2:302673‑M1/22‑140 (MQ=255)

                                                                                                             gAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                      <  2:1524849/140‑1 (MQ=255)

                                                                                                             agctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                      >  1:1008419‑M1/21‑140 (MQ=255)

                                                                                                              gctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGc                     >  2:763894‑M1/20‑140 (MQ=255)

                                                                                                               atatTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCt                    >  2:93069/1‑140 (MQ=255)

                                                                                                                 atcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  1:1391016‑M1/124‑1 (MQ=255)

                                                                                                                   tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:525584/140‑1 (MQ=255)

                                                                                                                   tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:1644708/140‑1 (MQ=255)

                                                                                                                   cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:182719‑M1/15‑140 (MQ=255)

                                                                                                                   cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:1434415‑M1/15‑140 (MQ=255)

                                                                                                                   cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:1318049‑M1/15‑140 (MQ=255)

                                                                                                                   cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:829374‑M1/15‑140 (MQ=255)

                                                                                                                   cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:1725551‑M1/15‑140 (MQ=255)

                                                                                                                     aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  2:1741286/136‑1 (MQ=255)

                                                                                                                     aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  2:723455/1‑140 (MQ=255)

                                                                                                                     aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  2:962936/1‑140 (MQ=255)

                                                                                                                     aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  1:352599/1‑140 (MQ=255)

                                                                                                                      tgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             >  2:1531915‑M1/12‑140 (MQ=255)

                                                                                                                      tgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             >  1:608837‑M1/12‑140 (MQ=255)

                                                                                                                       gttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            >  2:441505‑M1/11‑140 (MQ=255)

                                                                                                                        ttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  1:916105‑M1/10‑140 (MQ=255)

                                                                                                                        gATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  2:810605/1‑140 (MQ=255)

                                                                                                                         aTAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACta          >  1:414758/1‑140 (MQ=255)

                                                                                                                          atatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtat         <  1:1131210‑M1/133‑1 (MQ=255)

                                                                                                                          atatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  2:318200‑M1/131‑1 (MQ=255)

                                                                                                                            gTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatat       >  2:905427/1‑140 (MQ=255)

                                                                                                                                aAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  2:1172534‑M1/139‑1 (MQ=255)

                                                                                                                                aAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  2:1028916‑M1/139‑1 (MQ=255)

                                                                                                                                aAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  1:556426‑M1/139‑1 (MQ=255)

                                                                                                                                 AGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  >  2:1721646‑M1/1‑140 (MQ=255)

                                                                                                                                 AGTAAATGGCGAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  2:428804‑M1/130‑1 (MQ=255)

                                                                                                                                 AGTAAATGGCGAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  1:428804‑M1/1‑130 (MQ=255)

TGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362872‑3363140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.