BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,619,336	C→A	R73S (CGT→AGT)	marR →	DNA‑binding transcriptional repressor MarR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,619,336	0	C	A	100.0%	114.1 / NA	34	R73S (CGT→AGT)	marR	DNA‑binding transcriptional repressor MarR
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (22/12); total (22/12)

GCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGCCA  >  NC_000913/1619199‑1619469

gCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGt                                                                                                                                     >  2:563475/1‑140 (MQ=255)

  cTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTAt                                                                                                                                   >  2:394782/1‑140 (MQ=255)

            aGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGc                                                                                                                         >  2:594641/1‑140 (MQ=255)

               aTCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTg                                                                                                                      >  1:270314/1‑140 (MQ=255)

                 cTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGt                                                                                                                    <  2:904669/140‑1 (MQ=255)

                               tatTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTggg                                                                                                      >  1:670362/1‑140 (MQ=255)

                                       cgGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTG‑AAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGt                                                                                             >  1:902894/1‑140 (MQ=255)

                                                 tAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAAcc                                                                                    <  1:511697/140‑1 (MQ=255)

                                                       gctctgctctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATg                                                                              >  2:212780/1‑140 (MQ=255)

                                                       gctctgctctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATg                                                                              >  2:171620/1‑140 (MQ=255)

                                                         tctgctctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGAc                                                                            >  2:772491/1‑140 (MQ=255)

                                                         tctgctctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGAc                                                                            >  1:928657/1‑140 (MQ=255)

                                                                       tGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACt                                                              >  1:794578/1‑140 (MQ=255)

                                                                       tGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACt                                                              >  2:135009/1‑140 (MQ=255)

                                                                                        tCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACcg                                             >  1:219406/1‑140 (MQ=255)

                                                                                          cGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACcggc                                           >  1:882533/1‑140 (MQ=255)

                                                                                          cGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACcggc                                           >  2:400457/1‑140 (MQ=255)

                                                                                             ttGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCggcggc                                        <  2:270314/140‑1 (MQ=255)

                                                                                             ttGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCggcggc                                        <  2:612235/140‑1 (MQ=255)

                                                                                             ttGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCggcggc                                        <  2:815815/140‑1 (MQ=255)

                                                                                             ttGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCggcggc                                        <  2:417742/140‑1 (MQ=255)

                                                                                             ttGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCggcggc                                        <  1:772491/140‑1 (MQ=255)

                                                                                                 aCTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGgcggcgcgg                                    >  2:410550/1‑140 (MQ=255)

                                                                                                  ccgAAACAGGTAGTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCATGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGgcggcgcggc                                   <  2:442300/138‑1 (MQ=255)

                                                                                                  cTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGgcggcgcggc                                   <  2:670362/140‑1 (MQ=255)

                                                                                                     aaaaaGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAat                                >  2:400478/1‑140 (MQ=255)

                                                                                                     aaaaaGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAat                                <  1:171620/140‑1 (MQ=255)

                                                                                                     aaaaaGGTATTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAat                                <  1:212780/140‑1 (MQ=255)

                                                                                                             aTTGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAAc                        >  2:687117/1‑140 (MQ=255)

                                                                                                               tGTCGGTCGACCTGGGAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACaa                      >  1:203208/1‑140 (MQ=255)

                                                                                                                             ggAGCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGt        <  1:224891/140‑1 (MQ=255)

                                                                                                                                gCACTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTgg     <  2:882533/140‑1 (MQ=255)

                                                                                                                                   cTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGCCa  >  2:558960/1‑140 (MQ=255)

                                                                                                                                   cTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGCCa  >  1:720131/1‑140 (MQ=255)

                                                                                                                                   cTGACCAGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGCCa  >  2:71324/1‑140 (MQ=255)

GCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGCCA  >  NC_000913/1619199‑1619469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`