mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 372,640 | 0 | T | G | 37.9% | 31.4 / 10.4 | 29 | L176V (TTA→GTA) | mhpD | 2‑hydroxypentadienoate hydratase |
| * | NC_000913 | 4,604,344 | 0 | C | T | 34.5% | 38.5 / 11.6 | 29 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 2,326,450 | 0 | T | G | 33.3% | 44.7 / 13.5 | 30 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 2,001,918 | 0 | A | C | 32.4% | 58.2 / 15.3 | 37 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 32 (0.820) | 6 (0.160) | 6/260 | 3.1 | 21.1% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 15 (0.410) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 374963 | NA (NA) | 3 (0.110) | 3/192 | 3.4 | NA | noncoding (33/34 nt) | other | REP31a |
| ? | NC_000913 | = 377487 | NA (NA) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 3307317 | 51 (1.310) | 3 (0.080) | 3/258 | 4.3 | 7.8% | coding (544/1890 nt) | deaD | ATP‑dependent RNA helicase DeaD |
| ? | NC_000913 | = 3307401 | 24 (0.660) | coding (460/1890 nt) | deaD | ATP‑dependent RNA helicase DeaD | |||||
| * | ? | NC_000913 | 377321 = | NA (NA) | 3 (0.080) | 3/270 | 4.4 | NA | intergenic (+10/+214) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| ? | NC_000913 | = 508817 | NA (NA) | noncoding (2/34 nt) | other | REP48e | |||||
| * | ? | NC_000913 | = 1824476 | 23 (0.590) | 3 (0.080) | 3/274 | 4.5 | 10.8% | coding (462/576 nt) | ves | HutD family protein Ves |
| ? | NC_000913 | = 4291062 | 27 (0.700) | coding (587/957 nt) | nrfD | putative menaquinol‑cytochrome c reductase subunit NrfD | |||||