New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2189906 =	49 (0.690)	3 (0.040)	3/274	7.5	5.0%	coding (1005/2481 nt)	yehB	putative fimbrial usher protein YehB
	?	NC_000913	2190004 =	66 (0.930)					coding (907/2481 nt)	yehB	putative fimbrial usher protein YehB
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGCGACCATCGAGCCACCATACAGCGTCAATAAATTATTAAAACCATACTGATAACCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCAACTGCAAATCTGTAATCGCGAACGGGCCA  >  NC_000913/2189770‑2190038                                                                                                                                          |                                                                                                                                     tCGCGACCATCGAGCCACCATACAGCGTCAATAAATTATTAAAACCATACTGATAACCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGt                                                                                                                                   >  1:72763/1‑140 (MQ=255)   gcgACCACCGACCCACCATACAGCGAAAAAAAATTATAAAACCCATACTGATACCCCGCCTGAACAAAATCTTTTTGTTTGCTCCCCCC‑TTAAATATGGCTACGCCCCGCCGCTAAATCATATTTCGACACGCCGGGTTg                                                                                                                                 <  2:929160/140‑1 (MQ=255)                        aGCGTCAATAAATTATTAAAACCATACTGATAACCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGc                                                                                                            >  1:860679/1‑140 (MQ=255)                           gcaaaTAAATTAAAAAACCCTTATTAATACCCCCCAGGAAAAAAATTCTTTTGTTTGCCCCCCCC‑TTAAATGTGGCTAGCCCCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATa                                                                                                         <  2:569142/137‑1 (MQ=255)                           gTCAATAAATTATTAAAACCATACTGATAACCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATa                                                                                                         >  1:1084741/1‑140 (MQ=255)                            tCAATAAATTATTAAAACCATACTGATAACCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATaa                                                                                                        >  2:24350/1‑140 (MQ=255)                            tCAATAAATTATTAAAACCATACTGATAACCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATaa                                                                                                        >  1:198762/1‑140 (MQ=255)                             cAATAAATTATTAAAACCATACTGATAACCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAg                                                                                                       >  2:876628/1‑140 (MQ=255)                             cAATAAATTATTAAAACCATACTGATAACCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAg                                                                                                       >  1:239662/1‑140 (MQ=255)                              aaaaaaTTATAAAAACAATACTAAAACCCCGCCTGAAAAAAATCTCTTTGTTTGCCCGCCCC‑TAAAATATGGCTCCGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGTAGCATATTTGGCACCGCTGCATAAgg                                                                                                      <  2:402210/137‑1 (MQ=255)                               aTAAATTATTAAAACCATACTGATAACCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAgga                                                                                                     >  2:699378/1‑139 (MQ=255)                                 aaaTTATAAAACCCATCCTAATCCCCCGCCTGGAAAAAATCTTTTTTTTTCCTCCCCCC‑TTAAATAGGGCTACGCCCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCAc                                                                                                   <  2:250062/140‑1 (MQ=255)                                     tataaAACCCTTACTAAAACCCCGCCGGAAAAAAATCTTTTTTTTTGCCCCCCCC‑TTAAATATGCCTCCACCCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGa                                                                                               <  2:211747/140‑1 (MQ=255)                                                 aCTGATAACCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTAcc                                                                                   >  1:1090474/1‑140 (MQ=255)                                                     aTAACCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGc                                                                               >  1:1104613/1‑140 (MQ=255)                                                     aTAACCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGc                                                                               >  2:721831/1‑140 (MQ=255)                                                      tAACCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGcc                                                                              >  1:613114/1‑140 (MQ=255)                                                      tAACCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGcc                                                                              >  1:705996/1‑140 (MQ=255)                                                       aaCCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCg                                                                             >  1:842954/1‑140 (MQ=255)                                                       aaCCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCg                                                                             >  1:789603/1‑140 (MQ=255)                                                        ccccGCCTGAAAAAAATCTTTTTTTTTGCCCCCCCC‑TTAAATATGGCTCCGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGt                                                                            <  2:72763/139‑1 (MQ=255)                                                        aCCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGt                                                                            >  1:541069/1‑140 (MQ=255)                                                             ccTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGcc                                                                       >  2:1144862/1‑140 (MQ=255)                                                                      aatctttttgtttcCCCCCCCC‑TTAATTATGGCTCGCCCCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACg                                                              <  2:332538/134‑1 (MQ=255)                                                                       aTCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGc                                                             >  1:1176385/1‑140 (MQ=255)                                                                          cttttttttgCCCCCCCCTTTAAATAGGGCTACGCCCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTg                                                           <  2:1176385/138‑1 (MQ=255)                                                                           cTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGAc                                                         >  1:236412/1‑140 (MQ=255)                                                                                    cccccccc‑TTAAATATGTCGGGGCCCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATc                                                <  2:705996/136‑1 (MQ=255)                                                                                      cGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTg                                              >  2:355177/1‑140 (MQ=255)                                                                                      cGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTg                                              >  2:1144342/1‑140 (MQ=255)                                                                                               cAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTccacca                                      >  2:90684/1‑140 (MQ=255)                                                                                                aaTATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCcaccac                                     <  1:1144862/140‑1 (MQ=255)                                                                                                aaTATGCCTACGCCCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCcaccac                                     <  1:33298/140‑1 (MQ=255)                                                                                                    tGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGc                                 >  1:196721/1‑140 (MQ=255)                                                                                                      gCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCa                               >  1:65572/1‑140 (MQ=255)                                                                                                       cTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCaa                              >  2:236701/1‑140 (MQ=255)                                                                                                          cGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCAACTg                           >  2:53014/1‑140 (MQ=255)                                                                                                             cccGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCAACTGCaa                        <  1:202257/140‑1 (MQ=255)                                                                                                             cccGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTATTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCAACTGCaa                        <  2:541069/140‑1 (MQ=255)                                                                                                                gccgcTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCAACTGCAAATc                     >  2:1075458/1‑140 (MQ=255)                                                                                                                gccgcTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCAACTGCAAATc                     >  1:758200/1‑140 (MQ=255)                                                                                                                            tatTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCAACTGCAAATCTGTAATCGCGaa         <  1:646471/140‑1 (MQ=255)                                                                                                                            tatTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCAACTGCAAATCTGTAATCGCGaa         >  1:1104060/1‑140 (MQ=255)                                                                                                                            tatTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCAACTGCAAATCTGTAATCGCGaa         <  1:1144342/140‑1 (MQ=255)                                                                                                                               ttCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCAACTGCAAATCTGTAATCGCGAACgg      >  2:421794/1‑140 (MQ=255)                                                                                                                                 cGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCAACTGCAAATCTGTAATCGCGAACGGGc    >  2:482118/1‑140 (MQ=255)                                                                                                                                   acacGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCAACTGCAAATCTGTAATCGCGAACGGGCCa  >  1:486300/1‑140 (MQ=255)                                                                                                                                   acacGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCAACTGCAAATCTGTAATCGCGAACGGGCCa  >  2:874931/1‑140 (MQ=255)                                                                                                                                   acacGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCAACTGCAAATCTGTAATCGCGAACGGGCCa  >  1:84245/1‑140 (MQ=255)                                                                                                                                          |                                                                                                                                     TCGCGACCATCGAGCCACCATACAGCGTCAATAAATTATTAAAACCATACTGATAACCCGCCTGGACAAAATCACTTTGTTTGCTCGCCCC‑TTCAATATGGCTACGACCCGCCGCTAAATCATATTTCGACACGCCGGGTTGCAGCATATTTGGCACCGCTGCATAAGGCACCAGATAGGTGGTTACCGAGCCGTCCGCCTCTTTCACGCTGACATCAAGATCTGCTCCACCACCGGCCAACTGCAAATCTGTAATCGCGAACGGGCCA  >  NC_000913/2189770‑2190038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.