| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 601,579 | C→G | P956A (CCG→GCG) | cusA → | copper/silver export system RND permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 601,579 | 0 | C | G | 98.1% | 193.6 / ‑3.4 | 53 | coding (2866/3144 nt) | cusA | copper/silver export system RND permease |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base G (29/23); minor base . (1/0); total (30/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
GCGGCATCTGGTTGCTGTGGTGGATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGCCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTCTGCTGCCGATTCTGTGGG > NC_000913/601442‑601714 | gcggcATCTGGTTGCTGTGGTGGATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGgccgtggcg < 2:230363/140‑1 (MQ=255)gcggcATCTGGTTGCTGTGGTGGATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGgccgtggcg < 1:281681/140‑1 (MQ=255) cATCTGGTTGCTGTGGTGGATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGcgtcgt > 1:820988/1‑140 (MQ=255) cATCTGGTTGCTGTGGTGGATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGcgtcgt > 1:568438/1‑140 (MQ=255) tCTGGTTGCTGTGGTGGATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTg > 1:79206/1‑140 (MQ=255) tGGTTGCTGTGGTGGATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGaa < 1:478229/140‑1 (MQ=255) gTTGCTGTGGTGGATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGaata > 2:860251/1‑140 (MQ=255) ttGCTGTGGTGGATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGaataa < 2:820988/140‑1 (MQ=255) ttGCTGTGGTGGATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGaataa < 2:568438/140‑1 (MQ=255) cTGTGGTGGATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATcc > 2:395049/1‑140 (MQ=255) tgtgGTGGATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCca > 2:543888/1‑140 (MQ=255) gtggtgGATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCcac < 2:863978/140‑1 (MQ=255) gtggtgGATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCcac < 1:395049/140‑1 (MQ=255) tggATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAAc > 1:180746/1‑140 (MQ=255) tggATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAAc > 2:720753/1‑140 (MQ=255) ggCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAg < 2:197519/140‑1 (MQ=255) gCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGc > 1:543609/1‑140 (MQ=255) gCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGc > 1:38359/1‑140 (MQ=255) gCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGc > 2:46968/1‑140 (MQ=255) ttCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAg < 1:654204/140‑1 (MQ=255) tCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGc < 2:508121/140‑1 (MQ=255) cATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCa < 1:165927/140‑1 (MQ=255) cATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCa < 1:229856/140‑1 (MQ=255) tCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCa > 1:264894/1‑134 (MQ=255) tCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCa < 2:264894/134‑1 (MQ=255) gTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGa < 1:860435/140‑1 (MQ=255) ggCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATg > 2:802076/1‑140 (MQ=255) gCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGa > 1:754804/1‑140 (MQ=255) gCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGa < 2:456536/140‑1 (MQ=255) cGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAg > 2:362865/1‑140 (MQ=255) gACGGGCCCTGGCTTTATCGCCCTCGCCGGGGTCGCCGCTGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAgg < 2:73864/140‑1 (MQ=255) gACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAgg < 2:753393/140‑1 (MQ=255) cGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTTGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCg < 2:217656/140‑1 (MQ=255) cGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCg < 2:38359/140‑1 (MQ=255) ggCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGtt > 1:469157/1‑140 (MQ=255) ttATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGgc < 1:88131/140‑1 (MQ=255) tATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGgcg < 2:79206/140‑1 (MQ=255) tATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGgcg < 1:531316/140‑1 (MQ=255) gCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTgcg > 1:836394/1‑140 (MQ=255) ccgccgAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCg > 2:784007/1‑140 (MQ=255) tggtgATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTg < 2:566216/140‑1 (MQ=255) gCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGa > 2:842363/1‑140 (MQ=255) gCTGATGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGa > 2:551189/1‑140 (MQ=255) aTGTATTTACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTAt > 2:380771/1‑140 (MQ=255) tttACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCg > 2:922488/1‑140 (MQ=255) tttACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCg > 1:524149/1‑140 (MQ=255) tttACGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCg > 2:419136/1‑140 (MQ=255) aCGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTc > 2:401041/1‑140 (MQ=255) cGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTct < 2:807270/140‑1 (MQ=255) cGTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTct < 2:818968/140‑1 (MQ=255) gTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTctg > 1:92419/1‑140 (MQ=255) gTCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTctg > 1:520353/1‑140 (MQ=255) tCACGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTctgc < 2:180746/140‑1 (MQ=255) aCGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTctgctg > 1:403210/1‑140 (MQ=255) aCGCCATAGAGGCCGTGGCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTctgctg > 1:226589/1‑140 (MQ=255) aCGCCATAGAGGCCGTG‑CGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTCtgctgc > 1:549491/1‑140 (MQ=255) gccgtggcgtCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGTGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTCTGCTGCCGATTCtgtg > 1:771916/1‑140 (MQ=255) gccgtggcgtCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTCTGCTGCCGATTCtgtg < 2:836394/140‑1 (MQ=255) gccgtggcgtCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTCTGCTGCCGATTCtgtg < 1:860251/140‑1 (MQ=255) gccgtggcgtCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTCTGCTGCCGATTCtgtg < 2:92419/140‑1 (MQ=255) cgtggcgtCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTCTGCTGCCGATTCTGTggg > 1:297092/1‑140 (MQ=255) cgtggcgtCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTCTGCTGCCGATTCTGTggg > 1:234320/1‑140 (MQ=255) | GCGGCATCTGGTTGCTGTGGTGGATGGGCTTTCATCTTTCCGTGGCGACGGGCACTGGCTTTATCGCCCTCGCCGGGGTCGCCGCCGAATTTGGCGTGGTGATGCTGATGTATTTACGTCACGCCATAGAGGCCGTGCCGTCGTTGAATAATCCACAAACATTCAGCGAGCAGAAGCTGGATGAGGCGTTATATCACGGCGCGGTCCTGCGCGTGCGCCCGAAAGCGATGACGGTGGCGGTGATTATCGCCGGTCTGCTGCCGATTCTGTGGG > NC_000913/601442‑601714 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |