mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 48.5% | 8.8 / 28.4 | 33 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,111,747 | 0 | G | T | 34.6% | 48.2 / 15.6 | 26 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 2,001,918 | 0 | A | C | 34.2% | 72.1 / 14.5 | 41 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 29,496 | 0 | T | A | 30.8% | 69.0 / 16.9 | 39 | intergenic (+301/‑155) | dapB/carA | 4‑hydroxy‑tetrahydrodipicolinate reductase/carbamoyl phosphate synthetase subunit alpha |
| * | NC_000913 | 3,926,366 | 0 | A | C | 29.0% | 128.1 / 20.3 | 62 | G30G (GGT→GGG) | mioC | flavoprotein MioC |
| * | NC_000913 | 3,206,435 | 0 | C | T | 28.6% | 45.3 / 11.6 | 28 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 2,326,450 | 0 | T | G | 22.6% | 122.7 / 21.4 | 53 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 4,568,512 | 0 | C | A | 21.3% | 128.5 / 14.4 | 47 | R3L (CGT→CTT) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| * | NC_000913 | 646,747 | 0 | T | G | 20.0% | 81.2 / 11.7 | 35 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 608007 = | NA (NA) | 4 (0.090) | 4/226 | 5.0 | 7.4% | noncoding (1/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 609352 = | 50 (1.100) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
| * | ? | NC_000913 | = 2430962 | NA (NA) | 7 (0.170) +36 bp |
3/206 | 5.1 | NA | noncoding (33/34 nt) | other | REP169a |
| ? | NC_000913 | = 4614644 | NA (NA) | noncoding (36/37 nt) | other | REP352h | |||||
| * | ? | NC_000913 | 4542682 = | 50 (0.890) | 3 (0.060) | 3/260 | 6.1 | 5.1% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 65 (1.240) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 3325372 = | 61 (1.090) | 3 (0.060) | 3/264 | 6.1 | 4.9% | coding (1564/1935 nt) | ftsH | ATP‑dependent zinc metalloprotease FtsH |
| ? | NC_000913 | = 3325368 | 58 (1.090) | coding (1568/1935 nt) | ftsH | ATP‑dependent zinc metalloprotease FtsH | |||||
| * | ? | NC_000913 | 374922 = | NA (NA) | 7 (0.130) | 3/262 | 6.1 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377329 = | NA (NA) | intergenic (+18/+206) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 738656 | 49 (0.880) | 3 (0.050) | 3/278 | 6.4 | 4.3% | coding (565/762 nt) | ybfD | H repeat‑associated putative transposase YbfD |
| ? | NC_000913 | = 3624505 | 83 (1.480) | coding (128/1137 nt) | yhhI | putative transposase | |||||