Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 2,499,960 | Δ195 bp | coding (1290‑1484/1698 nt) | ypdA → | sensory histidine kinase YpdA |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 2499960 | 2500154 | 195 | 69 [0] | [0] 69 | ypdA | sensory histidine kinase YpdA |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 2499959 | 0 (0.000) | 68 (0.780) | 40/274 | 0.9 | 100% | coding (1289/1698 nt) | ypdA | sensory histidine kinase YpdA |
? | NC_000913 | 2500155 = | 0 (0.000) | coding (1485/1698 nt) | ypdA | sensory histidine kinase YpdA |
CTGCATTCCCAGCCTGCTGATCCAGCCGTTGGTGGAGAACGCCATTGTCCACGGTATTCAGCCTTGCAAAGGTAAAGGCGTTGTCACCATCAGCGTTGCAGAGTGCGGAAATCGGGTACGCATTGCGGTGCGAGATACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGA > NC_000913/2500020‑2500292 | tctgaatccggataccgctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCg > 2:717365‑M2/136‑140 (MQ=255) tctgaatccggataccgctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCg > 1:1081483‑M2/136‑140 (MQ=255) tgaatccggataccgctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCggg < 2:318821‑M2/7‑1 (MQ=255) gatgccgctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCAt < 1:720777‑M2/15‑1 (MQ=255) gataccgctcgccagttggtctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCAt < 2:783717‑M2/15‑1 (MQ=255) gataccgctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCAt < 2:190987‑M2/15‑1 (MQ=255) gataccgctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCAt < 1:109276‑M2/15‑1 (MQ=255) gataccgctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCAt < 1:407138‑M2/15‑1 (MQ=255) gataccgctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCAt < 1:300738‑M2/15‑1 (MQ=255) gataccgctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCAt < 1:897872‑M2/15‑1 (MQ=255) gataccgctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCAt > 2:1293577‑M2/126‑140 (MQ=255) gataccgctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCAt > 1:1394428‑M2/126‑140 (MQ=255) ccgctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGAt < 1:717365‑M2/19‑1 (MQ=255) ccgctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGAt > 2:1088283‑M2/122‑140 (MQ=255) ctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCAt < 1:1385005‑M2/15‑1 (MQ=255) ctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCAt > 2:1385005‑M2/119‑133 (MQ=255) ctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCa > 2:244197‑M2/119‑140 (MQ=255) ctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCa > 2:1383667‑M2/119‑140 (MQ=255) ctcgccagttgatctttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCa > 1:368234‑M2/119‑140 (MQ=255) ttaatctgtcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCgg > 1:1361921‑M2/104‑140 (MQ=255) tcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGc > 2:222736‑M2/96‑140 (MQ=255) tcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGc > 1:1187772‑M2/96‑140 (MQ=255) tcgcgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGc < 2:368234‑M2/45‑1 (MQ=255) cgttatctgcgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGaa > 1:1396475‑M2/93‑140 (MQ=255) cgctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAGAGGTGATTGAGCGGGTCGAAGCGAATGAAATGcc > 2:148320‑M2/84‑140 (MQ=255) gctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCg < 1:1293577‑M2/58‑1 (MQ=255) gctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCg < 1:82872‑M2/58‑1 (MQ=255) ctataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCgg > 2:351286‑M2/82‑140 (MQ=255) tataacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaAACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCggg < 1:182736‑M2/60‑1 (MQ=255) aacattgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCaa < 1:222736‑M2/63‑1 (MQ=255) ttgaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATaaa > 1:1383346‑M2/74‑140 (MQ=255) gaattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAAt > 2:1205348‑M2/72‑140 (MQ=255) aattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAAtt > 2:281949‑M2/71‑140 (MQ=255) aattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAAtt > 2:759000‑M2/71‑140 (MQ=255) aattaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAAtt > 1:1316343‑M2/71‑140 (MQ=255) ttaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTgg < 2:1394428‑M2/72‑1 (MQ=255) ttaaaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTgg < 2:935312‑M2/72‑1 (MQ=255) aaagacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCct > 1:1253854‑M2/66‑140 (MQ=255) gacgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCctgct < 1:1314076‑M2/78‑1 (MQ=255) cgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGa > 2:291019‑M2/61‑140 (MQ=255) cgatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGa < 2:1361921‑M2/80‑1 (MQ=255) gatgagcaaatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGTCGGGCAATAAAATTGGCCTGCTGaa > 2:560165‑M2/60‑140 (MQ=255) aatcgatatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCcatc < 2:307686‑M2/89‑1 (MQ=255) tatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATcgcg < 1:759000‑M2/95‑1 (MQ=255) tatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATcgcg > 1:1228561‑M2/46‑140 (MQ=255) tatcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATcgcg > 1:860667‑M2/46‑140 (MQ=255) tataaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATcgcg < 2:1113096‑M2/95‑1 (MQ=255) tcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTg < 2:1396475‑M2/97‑1 (MQ=255) tcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTg < 1:244197‑M2/97‑1 (MQ=255) tcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTg < 1:351286‑M2/97‑1 (MQ=255) tcaaaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTg < 2:643863‑M2/97‑1 (MQ=255) aaaaagagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAg < 2:1383346‑M2/100‑1 (MQ=255) agagctgtatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTAt < 1:1205348‑M2/104‑1 (MQ=255) tatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATgg > 2:1393411‑M2/30‑140 (MQ=255) tatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATgg > 2:1369879‑M2/30‑140 (MQ=255) tatcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATgg > 2:80552‑M2/30‑140 (MQ=255) tcaaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATGGCg < 1:1088283‑M2/113‑1 (MQ=255) caaattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATGGCGa < 2:524902‑M2/114‑1 (MQ=255) aattaaagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATGGCGAgg < 2:1228561‑M2/116‑1 (MQ=255) aagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATGGCGAGGGGCTg > 1:522659‑M2/20‑140 (MQ=255) aagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATGGCGAGGGGCTg > 2:772206‑M2/20‑140 (MQ=255) aagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATGGCGAGGGGCTg > 2:1069345‑M2/20‑140 (MQ=255) aagactatattgccattgaTACCGGGCACGGCATCGATCCAAAGGCGCTTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATGGCGAGGGGCTg > 2:914534‑M2/20‑140 (MQ=255) tattgccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATGGCGAGGGGCTGCATATcc > 1:965303‑M2/13‑140 (MQ=255) ccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATGGCGAGGGGCTGCatat < 2:545861‑M2/126‑1 (MQ=255) ccattgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATGGCGAGGGGCTGCatat > 1:545861‑M2/8‑133 (MQ=255) ttgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAGATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTg > 2:1077979‑M2/5‑140 (MQ=255) ttgaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTg > 2:626910‑M2/5‑140 (MQ=255) gaTACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGa > 2:385074‑M2/3‑140 (MQ=255) | CTGCATTCCCAGCCTGCTGATCCAGCCGTTGGTGGAGAACGCCATTGTCCACGGTATTCAGCCTTGCAAAGGTAAAGGCGTTGTCACCATCAGCGTTGCAGAGTGCGGAAATCGGGTACGCATTGCGGTGCGAGATACCGGGCACGGCATCGATCCAAAGGTGATTGAGCGGGTCGAAGCGAATGAAATGCCGGGCAATAAAATTGGCCTGCTGAATGTCCATCATCGCGTGAAGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGA > NC_000913/2500020‑2500292 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |