| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 43.0% | 66.1 / 57.1 | 79 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| Reads supporting (aligned to +/- strand): ref base C (9/36); new base T (34/0); total (43/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.44e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCAT > NC_000913/4604207‑4604481 | aTGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATtttttttt > 2:887874/1‑140 (MQ=255)aTGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATtttttttt > 2:1251327/1‑140 (MQ=255) cGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATtttttcttttt < 1:209864/140‑1 (MQ=255) gTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATtttttctttttt > 2:82607/1‑139 (MQ=255) cATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCAttttttttttttttt > 2:447078/1‑137 (MQ=255) cATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTg > 1:878989/1‑140 (MQ=255) gAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCa < 1:258534/140‑1 (MQ=255) tCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCCTGAGAAgg > 1:1159963/1‑139 (MQ=255) gTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATTCCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAg > 1:103128/1‑140 (MQ=255) gTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTTTTTTTTTT‑CCCTGAGAAGTGAg > 2:258534/1‑140 (MQ=255) gTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCATGAGAAGTggg > 2:974115/1‑138 (MQ=255) gTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAg > 1:442343/1‑140 (MQ=255) aTTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCATGAGAAGTGAgcg > 1:1301029/1‑140 (MQ=255) ttGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCCTGAGAAGTGAgcgc > 2:79343/1‑140 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCATGAGAAGGGAGGGCag > 1:311883/1‑140 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCATGAGAAGAGGGCGCag > 2:1023008/1‑140 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTG‑CCCTGAGAAGTGAGCGCag > 1:169298/1‑140 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTG‑CCATGGGAAGGGAGCGCag > 1:642286/1‑140 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCag < 2:124773/140‑1 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCag < 1:1207499/140‑1 (MQ=255) agagTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTTAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCaga < 1:446406/140‑1 (MQ=255) agagTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCaga < 1:887874/140‑1 (MQ=255) gagTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCaga‑g < 1:305667/140‑1 (MQ=255) gTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTGTCCCTG‑GAAGTGAGGGCcgg‑gag > 2:1389763/1‑140 (MQ=255) tttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCATGAGAAGTGAGCGCAGA‑GAgg > 2:16457/1‑140 (MQ=255) tttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTTTG‑CCATGAGAAGTGAGCGCAGA‑GAgg > 2:1182216/1‑140 (MQ=255) tttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAgg < 1:1362516/140‑1 (MQ=255) tttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAgg < 1:79343/140‑1 (MQ=255) ttATTCAGAAAGTTTGTGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCATTAGAAAGGAGGGCAGA‑GAggg > 2:882100/1‑140 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCATGAGAAGTGAGGGCAGA‑GAggg > 2:989395/1‑140 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTG‑CCATGAGAAGTGAGCGCAGA‑GAggg > 1:958505/1‑140 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAggg > 1:1221379/1‑140 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAggg < 1:989395/140‑1 (MQ=255) aaGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑GCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTg < 1:1251327/140‑1 (MQ=255) ggTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTG‑CCATGAGAAGGGAGCGCAGA‑GAGGGGTTTTCTTTCccggctga > 1:156163/1‑140 (MQ=255) tAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTA‑TCATGAGAAGGGAGCGCAGA‑GAGGGGGTATCTTGCCCGGCTTAAc > 1:743356/1‑140 (MQ=255) gCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGt < 1:16457/140‑1 (MQ=255) cTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTG‑CCATGAGAAGAGAGCGCAGA‑GGGGGGGTATTTTTTCTGACTGAACTGGCGGTTTAGtt > 2:1317816/1‑140 (MQ=255) tCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCCTGAGAAGGGAGCGCAGA‑GAGGGGTTATCTTTCCTGACTGAACTTGCGGTTTAGttt > 2:1250015/1‑140 (MQ=255) tCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTG‑CGCTGCGAAAGGCGGGCCCAGGAGGGATT‑TCTTGCCTGACCTAACAGGCGATTAAgcat > 2:690548/1‑137 (MQ=255) tCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTCTT‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGttt > 2:470894/1‑140 (MQ=255) ccATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCCG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTc < 2:1422194/140‑1 (MQ=255) ataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTAcc < 1:280992/140‑1 (MQ=255) ataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGGCATTTTTTTTTTTTTTG‑CCATTAGAAGGGGGCGCAGG‑GAGGGGGTATCTTGCCTGACTGGACTGGCGGTTTAGATTTCCCGTAcc > 2:438602/1‑140 (MQ=255) taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCCTGAGAAGTGAGCGCAGA‑GAGGGGTTATCTTTCCTGACTGAACTGGCGATTTAGTTTTCGCGTAccc > 2:821953/1‑140 (MQ=255) taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCATGAGAAGTGAGGGCAGA‑GAGGGGTTTTTTTTCCTGTCTGAAATGGCGATTAAGTTTTCGCGTAccc > 2:1357950/1‑140 (MQ=255) taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTG‑CCATGAGAAATGAGCACAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGGTTAAGTTTCCGCGTAccc > 1:1369909/1‑140 (MQ=255) taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTCTG‑CCATGAGAAGTGAGGGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTAccc > 2:1253980/1‑140 (MQ=255) ccAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTG‑TCCAGAGAAGGGAGCGCAGA‑GGGGGATTATCTTTCCTGACTGAAATGGGGCTTAAGGTTTCCCGTAACCgg > 2:658189/1‑140 (MQ=255) aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTCTG‑CCCTTAGGAGATAGCGCAGA‑GAGGGATTATCTTGTCTGGCTGAACTGGCGGTTTAATTTTCGCGTACCCgggg > 2:517326/1‑138 (MQ=255) gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTG‑GCCTCGGAAGTGAGCGCCGA‑GGGGGGGTTTTTTTGCTGTCTGCAACGGCGATTAAGTTTTCCCGTACCCGGCGt > 2:280992/1‑140 (MQ=255) gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGGTTATCTTTCCTGACTGAACTGGCGGTTAAGTTTCCGCGTACCCGGCgg > 2:853391/1‑139 (MQ=255) gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTTTT‑CCCTGAGAAGGGAGCGGAGG‑GGGGGGTTATCTTGCCTGACTGAACTGGGGGTTAAATTTTCGCGTACCCGGCgg > 2:569902/1‑139 (MQ=255) gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGt < 2:1221314/140‑1 (MQ=255) tCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGGTTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCggt > 1:478614/1‑138 (MQ=255) cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTCTTTTTCTT‑CCCTGAGAAGTGAGCGCAGA‑GAGGGGTTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGttt > 2:525225/1‑140 (MQ=255) cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCCTTAGAAGAGAGCGCAGA‑GGGGGGTTATCTTTCCTGACTGAAATGGCGGTTTAGTTTTCGCGTAccccggggtt > 2:1434264/1‑133 (MQ=255) cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTCTG‑CCATGAGAAGGGAGGGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGGTTAAGTTTTCGCGTACCCGGCGgtt > 2:471737/1‑140 (MQ=255) tCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGCCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTAt > 2:389572/1‑140 (MQ=255) cATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTAtt < 1:1253980/140‑1 (MQ=255) cATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTAtt < 1:821953/140‑1 (MQ=255) aTTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTg < 2:878989/140‑1 (MQ=255) tttCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTTTTTTTTTT‑CCATGAGAAGGGGGCGCAGA‑GAGGGGTTATCTTGCCTGACTGAACTGGCGGTTAAGTTTTCGCGGACCCCGCGGTTTGTTATTgt > 2:153662/1‑139 (MQ=255) tCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCgg < 1:1357950/140‑1 (MQ=255) tCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCgg < 1:826743/140‑1 (MQ=255) cAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGga < 2:147637/140‑1 (MQ=255) aGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCCTTAGAAGTGGGAGCAGA‑GAGGGGTTATCTTTCCTGCCTGAACTTGCGGTTAAGTTTTCGCGTACCCGGCGCTTTGTTTTTTCgggt > 2:195759/1‑138 (MQ=255) ggATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCATGAGAAGGGAGCGCAGA‑GAGGGGGTTTCTTTCCTGACTGAACTGGCGGTTTAGTTTTCCCGTACCCGGCGGTTTGTTAtttggggtg > 2:311013/1‑133 (MQ=255) gATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatga < 1:583750/140‑1 (MQ=255) gATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatga < 1:658189/140‑1 (MQ=255) gATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatga < 1:1062528/140‑1 (MQ=255) aTGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGGGTATTTTTCCTGACTGAACTGGCGGTTAAGTTTCCCCGTACCCCGCGCTTTGTTATTTTGgatgat > 2:583750/1‑140 (MQ=255) aTGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCTGGCGTTTAGTTATTGCGgatgat < 1:517326/140‑1 (MQ=255) aTGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGTGgatgat < 1:1389763/140‑1 (MQ=255) aTGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatgat < 1:853391/140‑1 (MQ=255) aTGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatgat < 1:882100/140‑1 (MQ=255) aTGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatgat < 1:974115/140‑1 (MQ=255) tGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatgatg < 2:1084706/140‑1 (MQ=255) gCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTCTT‑GCATCGGAAGTTAGCGCAGA‑GAGGGATTATCTTGCCCGACTGAACCCGCCATTAAGTTTCCGCGTGCCCCGCGTTTAGTTATTGCGggtggtga > 2:89090/1‑140 (MQ=255) cATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTCTT‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGata > 2:1342572/1‑140 (MQ=255) cgcgGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTT‑CCATGAGAAATGAGGGCAGG‑GAGGGGTTATCTTGCCTGACTGAACTGGCGGTTTAGTTTTCCCGTACCCGGCGGTTTGGTATTTGGGATGATGATATTGaa > 2:482716/1‑140 (MQ=255) tctcGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCGGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCgg < 2:415119/140‑1 (MQ=255) tctcGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCgg < 2:311883/140‑1 (MQ=255) tctcGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCgg < 2:442343/140‑1 (MQ=255) gTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGa < 1:447078/140‑1 (MQ=255) gTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGa < 2:1246746/140‑1 (MQ=255) tttGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTTAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGAt < 1:89090/140‑1 (MQ=255) tttGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGAt < 1:719662/140‑1 (MQ=255) tGCGGCGGTCATTTTTTCTTTTTTTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGGTTATCTTGCCTGACTGAACTGGCGATTAAGTTTTCGCGTACCCGGGGTTTAGTTATTTCGGGTGATGATATTGAAGCTCGGCTGATTg > 2:218527/1‑140 (MQ=255) tGCGGCGGGCCTTTTTTTTTTTTTTG‑CCATGAGAAAAGAGCGGCGA‑GAGGGGTTATTTTTCCCGACTGAACTGGCGATTTAGTTTCCGCGTACCCGGCGTTTTGTTATTTCGGTTGTTGATATTGAAGCTCGGCTGATTg > 2:984664/1‑140 (MQ=255) ttctttttctG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGTTCGGCTGATTGGTTCATTGTCGCCAt < 1:1250015/140‑1 (MQ=255) | ATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTG‑CCATGAGAAGTGAGCGCAGA‑GAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCAT > NC_000913/4604207‑4604481 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |