Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,101,5070TG30.1% 174.5 / 17.1 83intergenic (+77/‑183)sodA/kdgTsuperoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter
Reads supporting (aligned to +/- strand):  ref base T (9/49);  new base G (25/0);  total (34/49)
Fisher's exact test for biased strand distribution p-value = 4.85e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 109 total aligned reads displayed.

AAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGA  >  NC_000913/4101368‑4101644
                                                                                                                                            |                                                                                                                                         
aaaGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCgg‑tggt                                                                                                                                           >  2:1028771/1‑140 (MQ=255)
    agTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGttttt                                                                                                                                       <  2:454376/140‑1 (MQ=255)
    agTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGttttt                                                                                                                                       <  2:1678622/140‑1 (MQ=255)
      ttCTGGAACGTGGTGAGCTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGTCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGttttttt                                                                                                                                     <  1:1268953/140‑1 (MQ=255)
      ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGttttttt                                                                                                                                     >  1:1068550/1‑140 (MQ=255)
      ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGttttttt                                                                                                                                     >  1:985734/1‑140 (MQ=255)
      ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGttttttt                                                                                                                                     >  1:1774401/1‑140 (MQ=255)
      ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGttttttt                                                                                                                                     >  1:1537920/1‑140 (MQ=255)
      ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGgtttttt                                                                                                                                     >  2:1275598/1‑140 (MQ=255)
      ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGgtttttt                                                                                                                                     >  1:554552/1‑140 (MQ=255)
      ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGgtttttt                                                                                                                                     >  2:1832676/1‑140 (MQ=255)
      ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑GGGgtttttt                                                                                                                                     >  2:460868/1‑140 (MQ=255)
      ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑GGGctttttt                                                                                                                                     >  2:1245146/1‑140 (MQ=255)
      ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGACGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑GGGgtttttt                                                                                                                                     >  2:915579/1‑140 (MQ=255)
       tCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTtg                                                                                                                                    <  2:886851/140‑1 (MQ=255)
        cTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTtgt                                                                                                                                   >  1:942573/1‑140 (MQ=255)
           gAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGAt                                                                                                                                <  2:531516/140‑1 (MQ=255)
                tggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAAtt                                                                                                                           >  1:296938/1‑140 (MQ=255)
                  gtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGTGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTc                                                                                                                         <  1:1264144/140‑1 (MQ=255)
                  gtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTc                                                                                                                         <  2:1068550/140‑1 (MQ=255)
                     aaCTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TTGGTTTTTTGTTGTTAATTTCtaa                                                                                                                      >  1:1389593/1‑140 (MQ=255)
                     aaCTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTTTGATCAAtttttaa                                                                                                                      >  2:1315491/1‑136 (MQ=255)
                     aaCTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCaaa                                                                                                                      <  2:79139/140‑1 (MQ=255)
                     aaCTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCaaa                                                                                                                      <  1:732649/140‑1 (MQ=255)
                     aaCTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAATTTTaaa                                                                                                                      >  2:635819/1‑140 (MQ=255)
                     aaCTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAATTTTaaa                                                                                                                      >  2:228295/1‑140 (MQ=255)
                     aaCTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑GGGTTTTTTTGTGGTTAAATTTaaa                                                                                                                      >  1:470789/1‑140 (MQ=255)
                     aaCTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑AGGGTTTTTTTTGGTTAATTTTaaa                                                                                                                      >  2:732649/1‑140 (MQ=255)
                       cTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTTTGATCAATTTTAAAAt                                                                                                                    >  2:1085111/1‑140 (MQ=255)
                          ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATaaa                                                                                                                 <  1:1204245/140‑1 (MQ=255)
                          ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑GGGTTTTTTTGTGGTCAATTTCCAAATaaa                                                                                                                 >  1:668966/1‑140 (MQ=255)
                              gAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACa                                                                                                             <  2:1345619/140‑1 (MQ=255)
                              gAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACa                                                                                                             <  2:1774401/140‑1 (MQ=255)
                               aaGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTGTGATCAATTTCAAAATaaaaaaaa                                                                                                            >  1:330962/1‑140 (MQ=255)
                                agcagcGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTGTGATCAATTTCAAAATAAAAACaaa                                                                                                           >  1:1587816/1‑139 (MQ=255)
                                     cGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGATGGTTTTTTT‑TGATCAATTTTTAAAAAAAAAAAAAAATcc                                                                                                      >  2:5431/1‑140 (MQ=255)
                                     cGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAAATTTAAAATAAAAAAAATGATcc                                                                                                      >  2:301559/1‑140 (MQ=255)
                                        cACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat                                                                                                   <  1:765307/140‑1 (MQ=255)
                                        cACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat                                                                                                   <  1:635819/140‑1 (MQ=255)
                                        cACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat                                                                                                   <  1:17113/140‑1 (MQ=255)
                                        cACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat                                                                                                   <  1:1718139/140‑1 (MQ=255)
                                                   gcgAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACGATGATCCGATAAAAATAAAAc                                                                                        <  1:269239/140‑1 (MQ=255)
                                                   gcgAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAAc                                                                                        <  2:121777/140‑1 (MQ=255)
                                                     gAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAg                                                                                      <  1:1028771/140‑1 (MQ=255)
                                                     gAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAg                                                                                      <  2:1803911/140‑1 (MQ=255)
                                                        aaaaTAATCATTTGCCCCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGt                                                                                   <  2:1669734/140‑1 (MQ=255)
                                                              atCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAAt                                                                             <  1:376801/140‑1 (MQ=255)
                                                                 aTTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGt                                                                                   <  2:215454/131‑1 (MQ=255)
                                                                 aTTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGt                                                                                   >  1:215454/1‑131 (MQ=255)
                                                                  tttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAt                                                                         <  1:1832676/140‑1 (MQ=255)
                                                                   ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑CGGGGTTTTTTTGATAAATTTTAAAAAAAAAAAAAATCTCCGTCAAAAATAAAAAAACGGTTCaaattagg                                                                        >  2:667302/1‑134 (MQ=255)
                                                                    tGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGTTCAAATTCAAAAAAAAAACAAAGATCCGAAAAAAATAAAACAGCGGTTCAATTTAtgg                                                                       >  2:1198351/1‑139 (MQ=255)
                                                                    tGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAATTTTAAAATAAAAAAAATGATCCGCTAAAAATAAAAAAACGTTTCTATTGAtgt                                                                       >  2:1799171/1‑140 (MQ=255)
                                                                    tGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAAAAGCGGTTCAATTGAtgg                                                                       >  1:1570604/1‑139 (MQ=255)
                                                                    tGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑GGGGTTTTTTGTTGTCAATTTTAAAATAAAAACAATGATCCGATAAAAATAAAAAAACGTTTCAATTTAtgt                                                                       >  2:838638/1‑140 (MQ=255)
                                                                     gccgccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAtgtg                                                                      <  2:432123/140‑1 (MQ=255)
                                                                      ccgccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAATTTTAAAATAAAAAAAAAGATCCGATAAAAATAAAAAAGCGTTTCAATTGATGTgg                                                                     >  2:1596567/1‑140 (MQ=255)
                                                                             ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt                                                              <  2:1396016/140‑1 (MQ=255)
                                                                             ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt                                                              <  2:744637/140‑1 (MQ=255)
                                                                             ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt                                                              <  2:478915/140‑1 (MQ=255)
                                                                                     aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTTTGATTAATTTTAAAATAAAAAAAATTATCCACAAAAAATAAAACAACGTTTCAATAGATGTGGGTTTTATCACTTTTa                                                      >  2:368137/1‑140 (MQ=255)
                                                                                     aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTa                                                      <  1:368137/140‑1 (MQ=255)
                                                                                     aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTa                                                      <  1:1005538/140‑1 (MQ=255)
                                                                                     aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGGTCAATTTTAAAATAAAAACAATGATCCGCTAAAAATAAAACAGCGGTTCAATTGATTTGGTTTTGATCACctttt                                                      >  1:1758163/1‑139 (MQ=255)
                                                                                        cGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAATTTCAAAATAAAAAAAAAGATCCGATAAAAAAAAAACAGCGGTTCAATTGATGTGGTTTTGATCACTTTTAttt                                                   >  1:7091/1‑139 (MQ=255)
                                                                                               gCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaat                                            <  1:1141670/140‑1 (MQ=255)
                                                                                                 cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTTTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaatga                                          >  1:1630102/1‑140 (MQ=255)
                                                                                                 cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaatga                                          <  1:467502/140‑1 (MQ=255)
                                                                                                 cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGGTCAAATTCAAAATAAAAAAAAAGATACGATAAAAATAAAAAAACGTTTCAATTTTTGTGGTTTTGATTACTTTTTTTGCTTAaatga                                          >  2:318533/1‑140 (MQ=255)
                                                                                                 cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAATTTTAAAATAAAAAAAAAGATCCGATAAAAATAAAAAAGCGTTTCAATTGATGTGGGTTTGATTACTTTTATTTATTAaatga                                          >  2:960789/1‑140 (MQ=255)
                                                                                                 cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaatga                                          >  1:1515893/1‑140 (MQ=255)
                                                                                                 cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGGTTCAATTGATGTGGTTTTGATCACTTTTTTTTATTAaatga                                          >  1:134843/1‑140 (MQ=255)
                                                                                                  gCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAAAAAAACAGCGTTTTAATTGATGTGGTTTTTATCACTTTTATTTATTAaatgaa                                         >  2:1243589/1‑140 (MQ=255)
                                                                                                   cATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaatgaat                                        <  2:1094066/140‑1 (MQ=255)
                                                                                                   cATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATTAAATTCCAAAAAAAAAAAAAAATCCGAGAAAAAAAAAAAAGCGGTTTCATTGATGTGGTTTTGATCACTTTTATTTattaaattaaa                                        >  2:294443/1‑139 (MQ=255)
                                                                                                         aGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTTTGATTAATTTTAAAATAAAAAAAAAGATCCGATAAAAATAAAACAGCGTTTTAATTTATGTGGTTTTTATCACTTTTATTGATTAAATTAATATCTAt                                  >  2:467502/1‑140 (MQ=255)
                                                                                                         aGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAAATTTAAAATAAAAAAAAAAAATCGATAAAAATAAAACAACGTTTCAATTTTTGTGGTTTTTATTACTTTTTTTTTTTAAAATAAAGTCttt                                  >  2:451497/1‑138 (MQ=255)
                                                                                                           cTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCt                                <  2:1764051/140‑1 (MQ=255)
                                                                                                              aaaaaaTGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCg                             <  2:1630102/140‑1 (MQ=255)
                                                                                                              aaaaaaTGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCg                             <  1:1772036/140‑1 (MQ=255)
                                                                                                              aaaaaaTGAACCATCGCCAACGGCGG‑TAGCGTTTTTTGGATCAATTTCAAAATAAAAACAACGATTCTAGAAAAAAAAAACAGCGTTTCACTTTATGTGGGTTTGTTCACTTTTTTTTTTTAAATTTATGTTTttcttct                             >  2:156361/1‑139 (MQ=255)
                                                                                                               aaaaaTGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGGTAAATTTTAAAATAAAAACAATGATCCGATAAAAATAAAAAAGCGGTTCAATTGATGTGGGTTTTATCACTTTTTTTGATTAAATGAATGTCTATTTTctt                            >  1:1838647/1‑138 (MQ=255)
                                                                                                               aaaaaTGAACCATCGCCAACGGCGG‑TGGGTTTTTTGTGATCAATTTCAAAATAAAAAAAAAGATCCGATAAAAATAAAACAACGTTTTAATTGATGTGGTTTTTATCACTTTTATTTATTAAATGAAAGTCTATCTTCGt                            >  1:1033483/1‑140 (MQ=255)
                                                                                                                aaaaTGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGtt                           <  1:1243589/140‑1 (MQ=255)
                                                                                                                     gAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCAt                      <  1:719769/140‑1 (MQ=255)
                                                                                                                      aaCCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATc                     <  2:204968/140‑1 (MQ=255)
                                                                                                                      aaCCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATc                     <  2:296938/140‑1 (MQ=255)
                                                                                                                       aCCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCaa                   <  2:554552/140‑1 (MQ=255)
                                                                                                                        ccATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCaa                   <  2:408175/140‑1 (MQ=255)
                                                                                                                             gCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTg              <  1:1652839/140‑1 (MQ=255)
                                                                                                                                aaCGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATg           <  1:451497/140‑1 (MQ=255)
                                                                                                                                aaCGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATg           <  1:838638/140‑1 (MQ=255)
                                                                                                                                aaCGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATg           <  2:7091/140‑1 (MQ=255)
                                                                                                                                  cggcgg‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCt         <  2:857403/140‑1 (MQ=255)
                                                                                                                                     cgg‑TGGTTTTTTTTTGATCAATTTCAAAAAAAAAACAATGATCCGATAAAAATAAAAAAGCGTTTCAATTGATGTGGTTTTTATCACTTTTTTTGATTAAATAAAAGTCTATTTTCGTTTCCATCAACACTGATGCTccc      >  2:1331790/1‑139 (MQ=255)
                                                                                                                                     cgg‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCa      <  1:1198351/140‑1 (MQ=255)
                                                                                                                                      gg‑tggtTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCAt     <  1:1275598/140‑1 (MQ=255)
                                                                                                                                         tggtTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCTTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTg   <  2:145667/140‑1 (MQ=255)
                                                                                                                                         tggtTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTg   <  1:1085111/140‑1 (MQ=255)
                                                                                                                                          ggtTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGa  <  1:228295/140‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                         
AAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGA  >  NC_000913/4101368‑4101644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑