BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,440,436	C→T	L198L (CTG→CTA)	rpoA ←	RNA polymerase subunit alpha

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,440,436	0	C	T	100.0%	489.5 / NA	137	L198L (CTG→CTA)	rpoA	RNA polymerase subunit alpha
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (54/83); total (54/83)

Only 100 of 138 total aligned reads displayed.

TTTCACTTCAGGCTGACGTACATCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCCAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCG  >  NC_000913/3440301‑3440569

tttCACTTCAGGCTGACGTACATCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGt                                                                                                                                   <  2:1046549/140‑1 (MQ=255)

  tCACTTCAGGCTGACGTACATCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCg                                                                                                                                 <  2:469787/140‑1 (MQ=255)

     cTTCAGGCTGACGTACATCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTa                                                                                                                              <  2:945415/140‑1 (MQ=255)

       tCAGGCTGACGTACATCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACg                                                                                                                            <  1:970852/140‑1 (MQ=255)

       tCAGGCTGACGTACATCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACg                                                                                                                            <  2:1363911/140‑1 (MQ=255)

       tCAGGCTGACGTACATCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACg                                                                                                                            <  1:7933/140‑1 (MQ=255)

       tCAGGCTGACGTACATCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACg                                                                                                                            <  1:1862877/140‑1 (MQ=255)

          ggCTGACGTACATCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTg                                                                                                                         >  1:1545840/1‑140 (MQ=255)

           gCTGACGTACATCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTa                                                                                                                              >  1:1734098/1‑134 (MQ=255)

           gCTGACGTACATCACGTAAGTCAACGAAAGCATCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTa                                                                                                                              <  2:1734098/134‑1 (MQ=255)

               aCGTACATCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTa                                                                                                                    >  1:1974224/1‑140 (MQ=255)

               aCGTACATCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTa                                                                                                                    <  1:1298764/140‑1 (MQ=255)

                cGTACATCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTac                                                                                                                   >  2:2063791/1‑140 (MQ=255)

                cGTACATCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTac                                                                                                                   >  2:1284917/1‑140 (MQ=255)

                     aTCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACAcgcg                                                                                                              <  1:144300/140‑1 (MQ=255)

                     aTCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACAcgcg                                                                                                              <  2:2049016/140‑1 (MQ=255)

                     aTCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACAcgcg                                                                                                              <  2:836074/140‑1 (MQ=255)

                     aTCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACAcgcg                                                                                                              <  2:1308020/140‑1 (MQ=255)

                     aTCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACAcgcg                                                                                                              <  2:432644/140‑1 (MQ=255)

                     aTCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACAcgcg                                                                                                              <  2:1426234/140‑1 (MQ=255)

                      tCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACgcgc                                                                                                             <  1:1358747/140‑1 (MQ=255)

                      tCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACgcgc                                                                                                             <  1:1694360/140‑1 (MQ=255)

                         cGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCgctgc                                                                                                          >  2:1265619/1‑140 (MQ=255)

                         cGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCgctgc                                                                                                          >  2:2015972/1‑140 (MQ=255)

                         cGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCgctgc                                                                                                          >  1:1610908/1‑140 (MQ=255)

                         cGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCgctgc                                                                                                          >  2:1446112/1‑140 (MQ=255)

                             aGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCa                                                                                                      <  2:1271305/140‑1 (MQ=255)

                               tCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACTAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAAc                                                                                                    <  1:1675375/140‑1 (MQ=255)

                               tCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAAc                                                                                                    >  2:1882563/1‑140 (MQ=255)

                                 aaCGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACa                                                                                                   <  1:39350/139‑1 (MQ=255)

                                 aaCGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACAt                                                                                                  >  2:1237564/1‑140 (MQ=255)

                                 aaCGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACAt                                                                                                  >  2:1696370/1‑140 (MQ=255)

                                 aaCGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACAt                                                                                                  >  1:1296642/1‑140 (MQ=255)

                                  aCGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACAtt                                                                                                 <  1:1910439/140‑1 (MQ=255)

                                  aCGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCCGTTCTACACGCGCTGCTTCAACAtt                                                                                                 <  1:2047721/140‑1 (MQ=255)

                                   cGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACTACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTg                                                                                                >  2:1591028/1‑140 (MQ=255)

                                   cGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTg                                                                                                >  2:1003613/1‑140 (MQ=255)

                                    gAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGt                                                                                               <  2:1328652/140‑1 (MQ=255)

                                      aaGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAg                                                                                             <  1:93764/140‑1 (MQ=255)

                                            ccAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATa                                                                                       <  2:1622010/140‑1 (MQ=255)

                                              aGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACg                                                                                     <  2:603710/140‑1 (MQ=255)

                                              aGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACg                                                                                     <  2:87523/140‑1 (MQ=255)

                                              aGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGAACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACg                                                                                     >  1:839866/1‑140 (MQ=255)

                                                 tgttCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTc                                                                                  <  2:1196159/140‑1 (MQ=255)

                                                   ttCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATa                                                                                       >  1:1518434/1‑133 (MQ=255)

                                                   ttCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCca                                                                                <  2:1483351/140‑1 (MQ=255)

                                                   ttCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCca                                                                                >  1:1557117/1‑140 (MQ=255)

                                                   ttCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCca                                                                                <  1:1821191/140‑1 (MQ=255)

                                                   ttCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCca                                                                                >  1:815001/1‑140 (MQ=255)

                                                   ttCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCca                                                                                <  1:2015972/140‑1 (MQ=255)

                                                    tCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCcac                                                                               <  1:1873360/140‑1 (MQ=255)

                                                    tCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCcac                                                                               >  1:1601656/1‑140 (MQ=255)

                                                     cagacagaATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCcaca                                                                              <  1:1269912/140‑1 (MQ=255)

                                                     cAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCcaca                                                                              <  1:1237564/140‑1 (MQ=255)

                                                     cAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCcaca                                                                              <  2:209105/140‑1 (MQ=255)

                                                     cAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCcaca                                                                              <  1:723914/140‑1 (MQ=255)

                                                     cAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCcaca                                                                              <  1:1003613/140‑1 (MQ=255)

                                                     cAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCcaca                                                                              <  1:171626/140‑1 (MQ=255)

                                                       gCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAgg                                                                            >  2:1212328/1‑140 (MQ=255)

                                                        ccAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAggg                                                                           >  1:97297/1‑140 (MQ=255)

                                                          aGAATGGTTGCCACACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCt                                                                         <  1:1126124/140‑1 (MQ=255)

                                                            aaTGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGt                                                                       >  2:895901/1‑140 (MQ=255)

                                                               ggTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGc                                                                    <  2:279212/140‑1 (MQ=255)

                                                                    ccGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCg                                                               <  2:1766452/140‑1 (MQ=255)

                                                                      gCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTc                                                             >  1:1272997/1‑140 (MQ=255)

                                                                         cgacgaATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGAc                                                          <  2:1853907/140‑1 (MQ=255)

                                                                          gacgaATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGAcc                                                         >  1:1297905/1‑140 (MQ=255)

                                                                           acgaATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACca                                                        >  2:1883916/1‑140 (MQ=255)

                                                                              aaTCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACcagca                                                     <  1:1696370/140‑1 (MQ=255)

                                                                               aTCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACcagcag                                                    <  2:1286194/140‑1 (MQ=255)

                                                                                 cGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGAc                                                  <  1:29943/140‑1 (MQ=255)

                                                                                  gCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACg                                                 <  2:577832/140‑1 (MQ=255)

                                                                                         cAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGAtt                                          >  1:1416013/1‑140 (MQ=255)

                                                                                         cAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGGCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGAtt                                          >  2:445458/1‑140 (MQ=255)

                                                                                           ggATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTgg                                        <  1:111557/140‑1 (MQ=255)

                                                                                              tCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTggg                                       <  1:1884812/138‑1 (MQ=255)

                                                                                              tCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTggg                                       >  2:1884812/1‑138 (MQ=255)

                                                                                               cGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGgcgc                                    <  2:1360499/140‑1 (MQ=255)

                                                                                                 aTTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACGGGGCTGTAGCATGCATCGACCAGCAGACGGCCGATTGGGCGCTc                                  >  1:98521/1‑140 (MQ=255)

                                                                                                 aTTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTc                                  >  1:1190085/1‑140 (MQ=255)

                                                                                                 aTTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTc                                  >  1:160799/1‑140 (MQ=255)

                                                                                                 aTTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTc                                  >  2:342418/1‑140 (MQ=255)

                                                                                                 aTTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTc                                  >  1:590219/1‑140 (MQ=255)

                                                                                                 aTTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTc                                  >  2:1353621/1‑140 (MQ=255)

                                                                                                    gtgCCGTTGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCAtc                               <  1:978178/140‑1 (MQ=255)

                                                                                                          ttGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCt                                   >  1:1387233/1‑130 (MQ=255)

                                                                                                          ttGGTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCt                                   <  2:1387233/130‑1 (MQ=255)

                                                                                                            ggTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCg                       >  2:846862/1‑140 (MQ=255)

                                                                                                            ggTTTCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCg                       >  1:1966059/1‑140 (MQ=255)

                                                                                                               ttCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCgaat                    <  1:88929/140‑1 (MQ=255)

                                                                                                               ttCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCgaat                    <  1:456582/140‑1 (MQ=255)

                                                                                                               ttCCATTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCgaat                    <  1:1828540/140‑1 (MQ=255)

                                                                                                                   ctttCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAGCATTGTAGGCAATACGCCCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCGCATCTTCTTCCgaatgaat                <  2:1821448/139‑1 (MQ=255)

                                                                                                                   aTTTCGATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCgaatgaat                <  2:1966059/140‑1 (MQ=255)

                                                                                                                        gATGACCAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCggg           <  1:1227065/140‑1 (MQ=255)

                                                                                                                              cAGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAg     <  1:2072461/140‑1 (MQ=255)

                                                                                                                               aGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGc    <  1:413401/140‑1 (MQ=255)

                                                                                                                               aGCTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGc    <  2:1974224/140‑1 (MQ=255)

                                                                                                                                 cTTGTCTAGGTCGGTACGCTGTTCTACATGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCg  <  1:2063791/140‑1 (MQ=255)

                                                                                                                                 cTTGTCTAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCg  <  1:1432835/140‑1 (MQ=255)

TTTCACTTCAGGCTGACGTACATCACGTAAGTCAACGAAAGCTTCCAGTTGTTCAGCCAGAATGGTTGCCGCACGACGAATCGCCTCTTCAGGATCGATTGTGCCGTTGGTTTCCATTTCGATGACCAGCTTGTCCAGGTCGGTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCG  >  NC_000913/3440301‑3440569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`