Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,277,632	G→T	R55L (CGA→CTA)	soxR →	DNA‑binding transcriptional dual regulator SoxR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,277,632	0	G	T	100.0%	235.2 / NA	67	R55L (CGA→CTA)	soxR	DNA‑binding transcriptional dual regulator SoxR
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (34/33);  total (34/33)

AGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAG  >  NC_000913/4277495‑4277766                                                                                                                                          |                                                                                                                                       aGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTat                                                                                                                                      >  1:1058853/1‑140 (MQ=255)   cgcTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTatat                                                                                                                                    >  2:1466452/1‑140 (MQ=255)    gctgctAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATg                                                                                                                                   <  1:1007116/140‑1 (MQ=255)     ctgctAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGGTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGt                                                                                                                                  >  1:569068/1‑140 (MQ=255)     ctgctAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAAGGGTGATTATCAGCATTCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGt                                                                                                                                  >  2:880964/1‑140 (MQ=255)        ctAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGGTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGc                                                                                                                               >  2:410960/1‑140 (MQ=255)         tAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCa                                                                                                                              <  1:246460/140‑1 (MQ=255)           aCCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAAt                                                                                                                            >  2:427104/1‑140 (MQ=255)                cGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGGTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCa                                                                                                                       >  2:1433049/1‑140 (MQ=255)                  gCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCaaa                                                                                                                     >  2:625234/1‑140 (MQ=255)                      aGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAAGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAAttt                                                                                                                 >  2:1130773/1‑139 (MQ=255)                       gTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGc                                                                                                                <  1:1466452/140‑1 (MQ=255)                        tGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCt                                                                                                               <  1:427104/140‑1 (MQ=255)                         ggCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTc                                                                                                              <  1:1456462/140‑1 (MQ=255)                         ggCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTc                                                                                                              <  2:73936/140‑1 (MQ=255)                           cGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAg                                                                                                            <  1:410960/140‑1 (MQ=255)                             aaaCGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGTGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCg                                                                                                          <  1:1127090/140‑1 (MQ=255)                                                  tCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGc                                                                                        <  1:1475291/137‑1 (MQ=255)                                                  tCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGc                                                                                        >  2:1475291/1‑137 (MQ=255)                                                  tCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGAc                                                                                     >  2:873438/1‑140 (MQ=255)                                                  tCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGAc                                                                                     <  1:472461/140‑1 (MQ=255)                                                  tCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGAc                                                                                     <  1:833201/140‑1 (MQ=255)                                                    ggCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCa                                                                                   >  1:1069043/1‑140 (MQ=255)                                                    ggCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCa                                                                                   <  1:1058872/140‑1 (MQ=255)                                                                cTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGt                                                                       <  1:625234/140‑1 (MQ=255)                                                                     aaaGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGc                                                                  >  1:753453/1‑140 (MQ=255)                                                                       aGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCgt                                                                >  1:1365813/1‑140 (MQ=255)                                                                         tAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCgtgt                                                              <  2:1365813/140‑1 (MQ=255)                                                                         tAAAGGATTGATTACCATTATCCTTAACAGCGGCAATCAGCGGCGATATAAAAGTGATGTCTTGCTATATGTTGCAATTATCAAGATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCTTTTGGCgtgt                                                              <  2:1258100/140‑1 (MQ=255)                                                                           aaGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTg                                                            >  1:1127758/1‑140 (MQ=255)                                                                           aaGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTg                                                            >  2:1438452/1‑140 (MQ=255)                                                                               gTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg                                                        <  1:23330/140‑1 (MQ=255)                                                                                ttGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGa                                                       <  2:824629/140‑1 (MQ=255)                                                                                 tGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGaa                                                      <  1:1223711/140‑1 (MQ=255)                                                                                 tGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGaa                                                      >  1:961392/1‑140 (MQ=255)                                                                                  gATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAg                                                     <  1:1433049/140‑1 (MQ=255)                                                                                   aTTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAgg                                                    >  2:696918/1‑140 (MQ=255)                                                                                    ttACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAggg                                                   <  2:916467/140‑1 (MQ=255)                                                                                    ttACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAggg                                                   <  2:969390/140‑1 (MQ=255)                                                                                    ttACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTAAATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAggg                                                   <  2:1503011/140‑1 (MQ=255)                                                                                      aCCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGTGTGTTGCCCGAAGGGCa                                                 <  1:873438/140‑1 (MQ=255)                                                                                      aCCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCa                                                 >  1:799728/1‑140 (MQ=255)                                                                                        cAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATa                                               >  2:1463998/1‑140 (MQ=255)                                                                                        cAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATa                                               >  1:312097/1‑140 (MQ=255)                                                                                         aGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATAc                                              >  1:1272501/1‑140 (MQ=255)                                                                                         aGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATAc                                              >  1:842717/1‑140 (MQ=255)                                                                                             tCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTa                                          >  1:201812/1‑140 (MQ=255)                                                                                             tCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTa                                          >  2:1184733/1‑140 (MQ=255)                                                                                             tCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTa                                          >  1:562387/1‑140 (MQ=255)                                                                                                  aaCAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGc                                     >  1:1297333/1‑140 (MQ=255)                                                                                                   aCAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCg                                    <  2:1069043/140‑1 (MQ=255)                                                                                                    cAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGa                                   <  2:562387/140‑1 (MQ=255)                                                                                                     aGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGaa                                  >  1:503449/1‑140 (MQ=255)                                                                                                     aGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGaa                                  <  2:201812/140‑1 (MQ=255)                                                                                                     aGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGaa                                  >  2:267696/1‑140 (MQ=255)                                                                                                     aGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGaa                                  >  2:341036/1‑140 (MQ=255)                                                                                                     aGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGaa                                  >  1:385687/1‑140 (MQ=255)                                                                                                       cGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAag                                >  2:640299/1‑140 (MQ=255)                                                                                                       cGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAag                                >  1:1474429/1‑140 (MQ=255)                                                                                                       cGGCAATCAGCGGCGATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCAGTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAag                                >  2:173520/1‑140 (MQ=255)                                                                                                                    cgATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCt                   <  1:880964/140‑1 (MQ=255)                                                                                                                    cgATATAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCt                   <  1:816376/140‑1 (MQ=255)                                                                                                                      atatAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCttt                 >  1:1481587/1‑140 (MQ=255)                                                                                                                      atatAAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCttt                 <  1:640299/140‑1 (MQ=255)                                                                                                                        ataAACGTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCg               <  1:1184733/140‑1 (MQ=255)                                                                                                                           aaCGTGATGTGTTGCTATATGTTGGAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTcc            <  1:625856/140‑1 (MQ=255)                                                                                                                              gTGATGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCaa         >  1:171872/1‑140 (MQ=255)                                                                                                                                 aTGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATgg      >  2:500711/1‑140 (MQ=255)                                                                                                                                 aTGTGTTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATgg      >  1:1184755/1‑140 (MQ=255)                                                                                                                                     gtTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCgag  <  1:409026/140‑1 (MQ=255)                                                                                                                                     gtTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCgag  <  2:870422/140‑1 (MQ=255)                                                                                                                                     gtTGCTATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCgag  <  2:1272501/140‑1 (MQ=255)                                                                                                                                          |                                                                                                                                       AGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAG  >  NC_000913/4277495‑4277766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑