BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2406540	114 (1.060)	17 (0.150) +GCGGCAGCT	5/224	7.3	12.2%	coding (102/939 nt)	lrhA	DNA‑binding transcriptional dual regulator LrhA
*	?	NC_000913	2406541 =	133 (1.090)	17 (0.150) +GCGGCAGCT	5/224	7.3	12.2%	coding (101/939 nt)	lrhA	DNA‑binding transcriptional dual regulator LrhA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 147 total aligned reads displayed.

TTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGT  >  NC_000913/2406402‑2406677

tttCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑g                                                                                                                                          <  2:895453/140‑1 (MQ=255)

       gCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGc                                                                                                                                   >  2:2025183/1‑140 (MQ=255)

       gCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGc                                                                                                                                   >  2:2011887/1‑140 (MQ=255)

       gCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGc                                                                                                                                   >  2:1170656/1‑140 (MQ=255)

            aCCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCgg                                                                                                                              >  1:1717834/1‑140 (MQ=255)

               aagaagTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGgcag                                                                                                                           <  1:1243878/140‑1 (MQ=255)

                 gaagTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGgcagca                                                                                                                         >  1:251619/1‑140 (MQ=255)

                 gaagTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGgcagca                                                                                                                         <  1:1555968/140‑1 (MQ=255)

                  aagTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCaa                                                                                                                        <  2:832815/140‑1 (MQ=255)

                  aagTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCaa                                                                                                                        <  1:1326616/140‑1 (MQ=255)

                   agTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCaaa                                                                                                                       <  1:625670/140‑1 (MQ=255)

                    gTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCaaaa                                                                                                                      <  1:1036752/140‑1 (MQ=255)

                    gTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCaaaa                                                                                                                      <  1:1263076/140‑1 (MQ=255)

                     ttGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAg                                                                                                                     <  1:1208614/140‑1 (MQ=255)

                      tGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGc                                                                                                                                <  2:1668583/128‑1 (MQ=255)

                      tGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGc                                                                                                                                >  1:1668583/1‑128 (MQ=255)

                       gAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAgtg                                                                                                                   <  2:1396987/140‑1 (MQ=255)

                         aTGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGtt                                                                                                                 <  2:1936189/140‑1 (MQ=255)

                             cATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGa                                                                                                             <  2:1590358/140‑1 (MQ=255)

                             cATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGa                                                                                                             <  1:1634670/140‑1 (MQ=255)

                              aTGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGAt                                                                                                            >  2:276471/1‑140 (MQ=255)

                                     gTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGgcaac                                                                                                     <  1:235531/140‑1 (MQ=255)

                                      ttAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGtt                                                                                                                 >  2:442410/1‑127 (MQ=255)

                                      ttAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGtt                                                                                                                 <  1:442410/127‑1 (MQ=255)

                                      ttAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGgcaaca                                                                                                    >  2:282097/1‑140 (MQ=255)

                                        aaCAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGgcaacagc                                                                                                  <  2:111448/140‑1 (MQ=255)

                                        aaCAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGgcaacagc                                                                                                  <  1:238812/140‑1 (MQ=255)

                                        aaCAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGgcaacagc                                                                                                  <  1:2011887/140‑1 (MQ=255)

                                        aaCAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGgcaacagc                                                                                                  <  1:1007132/140‑1 (MQ=255)

                                           aGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGgcaacagcaac                                                                                               >  1:779414/1‑140 (MQ=255)

                                             tttGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGcaacaa                                                                                             <  2:123860/140‑1 (MQ=255)

                                             tttGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGcaacaa                                                                                             <  2:310337/140‑1 (MQ=255)

                                             tttGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGcaacaa                                                                                             >  1:310337/1‑140 (MQ=255)

                                             tttGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGcaacaa                                                                                             <  2:1717834/140‑1 (MQ=255)

                                             tttGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGcaacaa                                                                                             >  1:2054103/1‑140 (MQ=255)

                                              ttgttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGcaacaa                                                                                             <  2:203410/139‑1 (MQ=255)

                                              ttgttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGcaacaa                                                                                             >  1:203410/1‑139 (MQ=255)

                                              ttgttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACaaa                                                                                            >  2:1718845/1‑140 (MQ=255)

                                              ttgttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACaaa                                                                                            >  2:1618297/1‑140 (MQ=255)

                                               tgttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACaaaa                                                                                           >  2:513968/1‑139 (MQ=255)

                                               tgttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAAt                                                                                           <  1:399689/140‑1 (MQ=255)

                                                gttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATg                                                                                          >  2:1118238/1‑140 (MQ=255)

                                                gttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATg                                                                                          >  2:1146946/1‑140 (MQ=255)

                                                     gACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTtctc                                                                                     >  1:633820/1‑140 (MQ=255)

                                                       ccGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTcag                                                                                   >  1:1623377/1‑140 (MQ=255)

                                                            aCGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTtc                                                                                       <  1:144967/140‑1 (MQ=255)

                                                                 cGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgagg                                                                         <  1:940700/140‑1 (MQ=255)

                                                                  gAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACAGA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggt                                                                        <  1:1647341/140‑1 (MQ=255)

                                                                  gAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggt                                                                        <  2:1623377/140‑1 (MQ=255)

                                                                  gAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggt                                                                        <  1:850078/140‑1 (MQ=255)

                                                                  gAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggt                                                                        <  2:275613/140‑1 (MQ=255)

                                                                  gAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggt                                                                        <  2:1686989/140‑1 (MQ=255)

                                                                    aCAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggtcg                                                                      >  1:1134742/1‑140 (MQ=255)

                                                                    aCAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggtcg                                                                      <  1:1328801/140‑1 (MQ=255)

                                                                     cAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggtcga                                                                     <  2:634686/140‑1 (MQ=255)

                                                                                  aCGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggtcg                                                                      >  2:1261858/1‑126 (MQ=255)

                                                                                  aCGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCgg                                                        <  2:779414/140‑1 (MQ=255)

                                                                                  aCGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCgg                                                        <  2:1771467/140‑1 (MQ=255)

                                                                                  aCGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCgg                                                        <  1:1481229/140‑1 (MQ=255)

                                                                                  aCGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCgg                                                        <  2:2054103/140‑1 (MQ=255)

                                                                                  aCGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCgg                                                        <  2:1561586/140‑1 (MQ=255)

                                                                                  aCGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCgg                                                        <  1:194491/140‑1 (MQ=255)

                                                                                     aGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACg                                                     <  1:1976550/140‑1 (MQ=255)

                                                                                       ttgttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGAt                                                   <  1:276471/140‑1 (MQ=255)

                                                                                       ttgttCCAGACGCTGCATTTGCTGACTTACGGAGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCAAGGTCGAGGGTAATTATCGGACGAt                                                   >  1:1285474/1‑140 (MQ=255)

                                                                                            ccAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCa                                              <  1:1618297/140‑1 (MQ=255)

                                                                                            ccAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCa                                              <  2:1759388/140‑1 (MQ=255)

                                                                                             cAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCAc                                             <  1:820964/140‑1 (MQ=255)

                                                                                             cAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCAc                                             <  2:85165/140‑1 (MQ=255)

                                                                                                aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCa                                              <  2:1155829/136‑1 (MQ=255)

                                                                                                aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTa                                          <  2:633820/140‑1 (MQ=255)

                                                                                                 cGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTAt                                         <  2:1095021/140‑1 (MQ=255)

                                                                                                   cTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCa                                       <  2:894778/140‑1 (MQ=255)

                                                                                                   cTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCa                                       <  1:310588/140‑1 (MQ=255)

                                                                                                   cTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCa                                       <  1:1175695/140‑1 (MQ=255)

                                                                                                    tGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCat                                      >  1:1415601/1‑140 (MQ=255)

                                                                                                    tGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCa                                       <  1:433405/139‑1 (MQ=255)

                                                                                                    tGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCa                                       >  2:433405/1‑139 (MQ=255)

                                                                                                    tGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGGTAATTATCGGACGATTTGCACTTATCat                                      >  2:139506/1‑140 (MQ=255)

                                                                                                       aTTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCatata                                   <  1:1143955/140‑1 (MQ=255)

                                                                                                           gCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATAtattat                               <  2:1231586/140‑1 (MQ=255)

                                                                                                             tGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCa                             <  1:1776964/140‑1 (MQ=255)

                                                                                                                    cggcggACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTg                      <  1:282097/140‑1 (MQ=255)

                                                                                                                    cggcggACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTg                      <  2:1477039/140‑1 (MQ=255)

                                                                                                                         gACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTggcggc                 >  2:774228/1‑140 (MQ=255)

                                                                                                                              aGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATa            <  1:1780678/140‑1 (MQ=255)

                                                                                                                                   gACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAg       <  2:555975/140‑1 (MQ=255)

                                                                                                                                   gACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAg       <  1:1070313/140‑1 (MQ=255)

                                                                                                                                   gACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAg       <  1:1371701/140‑1 (MQ=255)

                                                                                                                                   gACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAg       <  2:394241/140‑1 (MQ=255)

                                                                                                                                   gACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAg       <  2:1294755/140‑1 (MQ=255)

                                                                                                                                   gACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAg       <  1:1171717/140‑1 (MQ=255)

                                                                                                                                   gACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAg       <  1:999951/140‑1 (MQ=255)

                                                                                                                                   gACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAg       <  1:892141/140‑1 (MQ=255)

                                                                                                                                   gACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAg       >  1:394241/1‑140 (MQ=255)

                                                                                                                                     cacaca‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCt     >  2:1097950/1‑140 (MQ=255)

                                                                                                                                        aca‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGt  >  2:1916618/1‑140 (MQ=255)

                                                                                                                                        aca‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGt  <  2:1134742/140‑1 (MQ=255)

                                                                                                                                        aca‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGt  >  1:792102/1‑140 (MQ=255)

                                                                                                                                        aca‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGt  >  1:1827022/1‑140 (MQ=255)

TTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACA‑‑‑‑‑‑‑‑‑GCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGT  >  NC_000913/2406402‑2406677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.