BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,758,540	T→C	T21A (ACA→GCA)	yfjH ←	CP4‑57 prophage; protein YfjH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,758,540	0	T	C	100.0%	441.9 / NA	115	T21A (ACA→GCA)	yfjH	CP4‑57 prophage; protein YfjH
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (52/63); total (52/63)

Only 100 of 117 total aligned reads displayed.

CGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGTATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGTTAGAATACT  >  NC_000913/2758403‑2758672

cGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCAt                                                                                                                                    >  1:288250/1‑140 (MQ=255)

   atgatCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTag                                                                                                                                 <  2:1599313/140‑1 (MQ=255)

   atgatCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTag                                                                                                                                 <  2:1082647/140‑1 (MQ=255)

    tgatCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTaga                                                                                                                                <  1:1780922/140‑1 (MQ=255)

                 gAACATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAAtt                                                                                                                   >  1:978095/1‑140 (MQ=255)

                  aaCATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTg                                                                                                                  >  2:903319/1‑140 (MQ=255)

                  aaCATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTg                                                                                                                  >  2:1337573/1‑140 (MQ=255)

                     aTCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTAt                                                                                                               >  2:1704895/1‑140 (MQ=255)

                      tCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTAtt                                                                                                              >  2:490494/1‑140 (MQ=255)

                       cAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTAttt                                                                                                             >  2:971129/1‑140 (MQ=255)

                        aGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTAtttt                                                                                                            <  2:956487/140‑1 (MQ=255)

                            tCCACCGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGt                                                                                                        >  2:534751/1‑140 (MQ=255)

                               aCCGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACa                                                                                                     <  2:1234358/140‑1 (MQ=255)

                                 cGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTAttttt                                                                                                           >  1:520026/1‑132 (MQ=255)

                                 cGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTAttttt                                                                                                           <  2:520026/132‑1 (MQ=255)

                                 cGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATg                                                                                                   >  1:441998/1‑140 (MQ=255)

                                 cGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATg                                                                                                   >  2:415196/1‑140 (MQ=255)

                                  gCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATgg                                                                                                  >  1:833356/1‑140 (MQ=255)

                                   cccATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATggg                                                                                                 >  2:466962/1‑140 (MQ=255)

                                   cccATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATggg                                                                                                 >  1:1637550/1‑140 (MQ=255)

                                   cccATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATggg                                                                                                 >  2:574210/1‑140 (MQ=255)

                                   cccATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATggg                                                                                                 >  2:772226/1‑140 (MQ=255)

                                    ccATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGt                                                                                                >  2:157655/1‑140 (MQ=255)

                                       ttcgcattcgGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGtttt                                                                                             <  1:157655/140‑1 (MQ=255)

                                             ttcgGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCt                                                                                       <  2:1787298/140‑1 (MQ=255)

                                             ttcgGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCt                                                                                       <  1:1242626/140‑1 (MQ=255)

                                              tcgGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCtt                                                                                      >  1:645037/1‑140 (MQ=255)

                                               cgGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTa                                                                                     <  1:534751/140‑1 (MQ=255)

                                                  aCATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTG‑TCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGa                                                                                 <  1:1400521/140‑1 (MQ=255)

                                                   cATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGa                                                                                 <  1:327804/140‑1 (MQ=255)

                                                   cATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGa                                                                                 <  2:288250/140‑1 (MQ=255)

                                                    aTGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGAt                                                                                <  1:349563/140‑1 (MQ=255)

                                                    aTGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGAt                                                                                <  2:1705466/140‑1 (MQ=255)

                                                    aTGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGAt                                                                                <  2:162717/140‑1 (MQ=255)

                                                      gtgATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCATCATACATCAATGCATCAGAGGTTGTAAAAATTCTATTTTTCGTACATGGGTTTCTTGTCTTACCGATaa                                                                              <  2:1805637/140‑2 (MQ=255)

                                                      gtgATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATAc                                                                              <  1:842825/140‑1 (MQ=255)

                                                           aGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCAtt                                                                         >  1:245775/1‑140 (MQ=255)

                                                           aGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCAtt                                                                         >  2:1017342/1‑140 (MQ=255)

                                                            ggCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCAtt                                                                         >  1:323858/1‑139 (MQ=255)

                                                            ggCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCAtt                                                                         <  2:323858/139‑1 (MQ=255)

                                                            ggCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTa                                                                        >  2:1291418/1‑140 (MQ=255)

                                                              cGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAAt                                                                      <  1:1291418/140‑1 (MQ=255)

                                                              cGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAAt                                                                      <  1:772226/140‑1 (MQ=255)

                                                               gagaTCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAAtc                                                                     <  1:21304/140‑1 (MQ=255)

                                                                agaTCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAAtct                                                                    <  1:1275716/140‑1 (MQ=255)

                                                                 gaTCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAAtctc                                                                   >  2:1417471/1‑140 (MQ=255)

                                                                 gaTCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAAtctc                                                                   >  2:1154918/1‑140 (MQ=255)

                                                                  aTCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAAtctct                                                                  >  1:1047479/1‑140 (MQ=255)

                                                                    cACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATctctct                                                                <  1:1704895/140‑1 (MQ=255)

                                                                      cgtcgtTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTgg                                                              >  2:1123840/1‑139 (MQ=255)

                                                                       gtcgtTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCa                                                             >  2:181956/1‑140 (MQ=255)

                                                                        tcgtTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCaa                                                            <  1:621925/140‑1 (MQ=255)

                                                                         cgtTTTCTACAAATTTTTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAAc                                                           <  2:1541063/140‑1 (MQ=255)

                                                                         cgtTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAAc                                                           <  1:129041/140‑1 (MQ=255)

                                                                           ttttCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCa                                                         >  1:963145/1‑140 (MQ=255)

                                                                             ttCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCaaa                                                       >  1:1030983/1‑140 (MQ=255)

                                                                             ttCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCaaa                                                       <  1:1417471/140‑1 (MQ=255)

                                                                               cTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGt                                                     <  1:1713705/140‑1 (MQ=255)

                                                                                 aCAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGa                                                   <  1:393932/140‑1 (MQ=255)

                                                                                  cAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGaa                                                  <  2:291526/140‑1 (MQ=255)

                                                                                   aaaTTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAAc                                                 <  1:1190776/140‑1 (MQ=255)

                                                                                           ttaTAAAAAACATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATgaga                                         <  2:1554517/138‑1 (MQ=255)

                                                                                           tCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATgaga                                         <  2:1047479/140‑1 (MQ=255)

                                                                                              tAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGc                                      <  1:1468520/140‑1 (MQ=255)

                                                                                               aaaaaTCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATgaga                                         <  2:720895/136‑1 (MQ=255)

                                                                                                aaaaTCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGcaa                                    <  1:971129/140‑1 (MQ=255)

                                                                                                    tCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAg                                >  2:1154621/1‑140 (MQ=255)

                                                                                                    tCATTCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAg                                >  1:875292/1‑140 (MQ=255)

                                                                                                        tCAGAGAAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATg                            <  2:1618199/140‑1 (MQ=255)

                                                                                                            agaAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAGCCAATGAGAGGCAACAAGAATGaaga                        >  1:1229417/1‑138 (MQ=255)

                                                                                                            agaAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACa                        >  1:1075547/1‑140 (MQ=255)

                                                                                                            agaAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACa                        >  2:403251/1‑140 (MQ=255)

                                                                                                            agaAATCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAA‑TGTATTTTTGGTACATGGGTTTTTTGGCTTAAAGATAACCATTAATTTTTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATTAACaa                       >  2:1500073/1‑140 (MQ=255)

                                                                                                               aaTCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAatc                     >  2:912339/1‑140 (MQ=255)

                                                                                                               aaTCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAatc                     >  1:572119/1‑140 (MQ=255)

                                                                                                                 tCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAatcga                   >  2:1441527/1‑140 (MQ=255)

                                                                                                                 tCATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAatcga                   <  1:458340/140‑1 (MQ=255)

                                                                                                                  cATAAAACCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAatcgat                  <  2:645037/140‑1 (MQ=255)

                                                                                                                      aaaCCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGc              <  2:927497/140‑1 (MQ=255)

                                                                                                                      aaaCCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGc              <  2:1229417/140‑1 (MQ=255)

                                                                                                                      aaaCCACCATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGc              <  1:466962/140‑1 (MQ=255)

                                                                                                                        accaccATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCg            >  2:257897/1‑140 (MQ=255)

                                                                                                                        accaccATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCg            <  1:877551/140‑1 (MQ=255)

                                                                                                                        accaccATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCg            >  1:1509733/1‑140 (MQ=255)

                                                                                                                        accaccATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCg            >  2:261833/1‑140 (MQ=255)

                                                                                                                        accaccATAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCg            >  1:875305/1‑140 (MQ=255)

                                                                                                                         ccaccaTAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGt           <  1:1154621/140‑1 (MQ=255)

                                                                                                                           accaTAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGTTa         >  2:291980/1‑140 (MQ=255)

                                                                                                                           accaTAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGTTa         <  1:403251/140‑1 (MQ=255)

                                                                                                                           accaTAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGTTa         <  1:261833/140‑1 (MQ=255)

                                                                                                                           accaTAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGTTa         >  2:1435776/1‑140 (MQ=255)

                                                                                                                           accaTAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGTTa         <  2:1774979/140‑1 (MQ=255)

                                                                                                                           accaTAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGTTa         <  1:1172724/140‑1 (MQ=255)

                                                                                                                           accaTAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGTTa         <  2:875305/140‑1 (MQ=255)

                                                                                                                           accaTAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGTTa         <  1:1441604/140‑1 (MQ=255)

                                                                                                                            ccaTAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGTTa         >  2:58792/1‑139 (MQ=255)

                                                                                                                            ccaTAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGTTa         <  1:58792/139‑1 (MQ=255)

                                                                                                                            ccaTAAATCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGTTAg        >  1:122357/1‑140 (MQ=255)

                                                                                                                                aaaTCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGTTAGAAta    <  1:1441527/140‑1 (MQ=255)

                                                                                                                                  aTCAATGCATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGTTAGAAtact  <  1:181956/140‑1 (MQ=255)

CGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGCGAGATCACGTCGTTTTCTACAAATTTGTTCATAAAAATCATTCAGAGAAATCATAAAACCACCATAAATCAATGTATTAGAGGTTGTAAAAATTGTATTTTTGGTACATGGGTTTTTTGCCTTAAAGATACCCATTAATCTCTCTGCAACCAAAGTGAACCAATGAGAGGCAACAAGAATGAACAATCGATCGGCCGTTAGAATACT  >  NC_000913/2758403‑2758672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`