BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,623,187	C→A	C1332* (TGC→TGA)	rhsB →	rhs element protein RhsB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,623,187	0	C	A	100.0%	597.0 / NA	164	C1332* (TGC→TGA)	rhsB	rhs element protein RhsB
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (90/74); total (90/74)

Only 100 of 167 total aligned reads displayed.

TAAAATAAATAGCCAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAAGTCATTTTATT  >  NC_000913/3623052‑3623323

taaaataaaTAGCCAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGTATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGATGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTTACCTa                                                                                                                                      <  2:1326566/140‑1 (MQ=255)

 aaaataaaTAGCCAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTaa                                                                                                                                     <  2:1212700/140‑1 (MQ=255)

 aaaataaaTAGCCAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTaa                                                                                                                                     >  1:555323/1‑140 (MQ=255)

 aaaataaaTAGCCAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTaa                                                                                                                                     <  2:1735044/140‑1 (MQ=255)

    ataaattGCCAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATgg                                                                                                                                  <  1:1679460/140‑1 (MQ=255)

    ataaataGCCAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATgg                                                                                                                                  >  1:397174/1‑140 (MQ=255)

      aaataGCCAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTa                                                                                                                                <  2:1727149/140‑1 (MQ=255)

       aataGCCAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTAc                                                                                                                               <  2:555323/140‑1 (MQ=255)

        ataGCCAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACt                                                                                                                              >  2:1704781/1‑140 (MQ=255)

           gCCAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACt                                                                                                                              <  2:992913/137‑1 (MQ=255)

            ccAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTgaga                                                                                                                          <  2:397174/140‑1 (MQ=255)

            ccAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTgaga                                                                                                                          <  1:1349474/140‑1 (MQ=255)

            ccAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTAAATAGCCCTTGACCTAATGGTACTgaga                                                                                                                          >  2:329302/1‑140 (MQ=255)

             cAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGaa                                                                                                                         >  2:1724215/1‑140 (MQ=255)

               aTCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAg                                                                                                                       >  1:591696/1‑140 (MQ=255)

                  tATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTAt                                                                                                                    <  2:807871/140‑1 (MQ=255)

                      tGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGc                                                                                                                >  2:668400/1‑140 (MQ=255)

                      tGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGc                                                                                                                >  1:1666254/1‑140 (MQ=255)

                      tGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGc                                                                                                                <  1:1191510/140‑1 (MQ=255)

                      tGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGc                                                                                                                <  2:3233/140‑1 (MQ=255)

                          aaGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTAt                                                                                                            <  1:96006/140‑1 (MQ=255)

                          aaGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTAt                                                                                                            <  2:1666254/140‑1 (MQ=255)

                          aaGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTAt                                                                                                            <  1:1497837/140‑1 (MQ=255)

                          aaGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTAt                                                                                                            <  1:324697/140‑1 (MQ=255)

                          aaGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGAAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGt                                                                                                                      <  1:756285/130‑1 (MQ=255)

                               aaaGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATAc                                                                                                       <  1:1515810/140‑1 (MQ=255)

                                 agagTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTc                                                                                                     <  1:93460/140‑1 (MQ=255)

                                   agTTCGCTGGTTTAATATGTAAGGGTAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCAt                                                                                                   <  2:152275/140‑1 (MQ=255)

                                      tCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGt                                                                                                <  1:999178/140‑1 (MQ=255)

                                       cGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAGAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTg                                                                                               <  2:1360115/140‑1 (MQ=255)

                                       cGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGt                                                                                                >  1:1243323/1‑139 (MQ=255)

                                       cGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGt                                                                                                <  2:1243323/139‑1 (MQ=255)

                                       cGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTg                                                                                               >  1:1774597/1‑140 (MQ=255)

                                       cGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTg                                                                                               >  2:1641760/1‑140 (MQ=255)

                                       cGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTg                                                                                               >  1:1611633/1‑140 (MQ=255)

                                       cGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTg                                                                                               >  1:1646504/1‑140 (MQ=255)

                                       cGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTg                                                                                               >  1:966451/1‑140 (MQ=255)

                                       cGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTg                                                                                               >  2:492242/1‑140 (MQ=255)

                                           ggTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCTTTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGa                                                                                           <  1:4549/140‑1 (MQ=255)

                                              ttAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAg                                                                                        <  2:924264/140‑1 (MQ=255)

                                              ttAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAg                                                                                        <  2:1774597/140‑1 (MQ=255)

                                                aaTATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTc                                                                                      <  1:812046/140‑1 (MQ=255)

                                                   atGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATg                                                                                   <  1:583003/140‑1 (MQ=255)

                                                      tAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGgag                                                                                >  2:1465455/1‑140 (MQ=255)

                                                      tAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGgag                                                                                >  2:206327/1‑140 (MQ=255)

                                                      tAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGgag                                                                                >  2:1575601/1‑140 (MQ=255)

                                                      tAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGgag                                                                                >  1:1287324/1‑140 (MQ=255)

                                                       aaGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGgaga                                                                               >  1:6827/1‑140 (MQ=255)

                                                           ataataGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAatat                                                                           <  2:713102/140‑1 (MQ=255)

                                                           ataataGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAatat                                                                           >  1:417404/1‑140 (MQ=255)

                                                            taataGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATAtt                                                                          <  2:446749/140‑1 (MQ=255)

                                                            taataGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATAtt                                                                          >  2:758796/1‑140 (MQ=255)

                                                             aataGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTg                                                                         <  2:1600540/140‑1 (MQ=255)

                                                              ataGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTgg                                                                        >  2:1040171/1‑140 (MQ=255)

                                                              ataGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTgg                                                                        >  1:1580925/1‑140 (MQ=255)

                                                              ataGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTgg                                                                        >  1:1305703/1‑140 (MQ=255)

                                                                    gCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAatat                                                                           <  2:1799633/131‑1 (MQ=255)

                                                                    gCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGaa                                                                  >  2:371316/1‑140 (MQ=255)

                                                                    gCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGaa                                                                  >  2:1398188/1‑140 (MQ=255)

                                                                    gCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGaa                                                                  >  1:1019053/1‑140 (MQ=255)

                                                                    gCAGATATCTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGaa                                                                  >  2:1805461/1‑140 (MQ=255)

                                                                     cAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGaaa                                                                 >  2:869425/1‑140 (MQ=255)

                                                                     cAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGaaa                                                                 >  1:384644/1‑140 (MQ=255)

                                                                         tatTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATAtt                                                             >  2:449954/1‑140 (MQ=255)

                                                                          atTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATAttt                                                            <  2:417404/140‑1 (MQ=255)

                                                                            ttCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTc                                                          >  1:675260/1‑140 (MQ=255)

                                                                              ctcAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAg                                                        >  2:1791622/1‑140 (MQ=255)

                                                                              ctcAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAg                                                        >  1:513011/1‑140 (MQ=255)

                                                                                 aaCAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTa                                                     <  1:1575601/140‑1 (MQ=255)

                                                                                  aCAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTaa                                                    >  1:1036741/1‑140 (MQ=255)

                                                                                   cAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTaaa                                                   >  2:434258/1‑140 (MQ=255)

                                                                                   cAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTaaa                                                   <  2:591696/140‑1 (MQ=255)

                                                                                   cAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTaaa                                                   >  2:1297840/1‑140 (MQ=255)

                                                                                           aaCCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATAttt                                                            >  1:1652766/1‑123 (MQ=255)

                                                                                           aaCCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATAttt                                                            <  2:1652766/123‑1 (MQ=255)

                                                                                                aggagAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAg                                      >  1:862314/1‑140 (MQ=255)

                                                                                                 ggagAAAGAAAAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGt                                     <  1:426039/140‑1 (MQ=255)

                                                                                                        gaaaAGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGt                              <  1:258406/140‑1 (MQ=255)

                                                                                                         aaaaGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTa                             <  1:206327/140‑1 (MQ=255)

                                                                                                           aaGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTaaa                           <  2:1160918/140‑1 (MQ=255)

                                                                                                            aGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAg                          >  2:869173/1‑140 (MQ=255)

                                                                                                            aGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAg                          >  2:1281922/1‑140 (MQ=255)

                                                                                                            aGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAg                          >  2:406098/1‑140 (MQ=255)

                                                                                                            aGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAg                          <  1:869425/140‑1 (MQ=255)

                                                                                                            aGGATCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAg                          <  1:84376/140‑1 (MQ=255)

                                                                                                               aTCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATa                       <  1:1791622/140‑1 (MQ=255)

                                                                                                                tCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATaa                      >  1:1115370/1‑140 (MQ=255)

                                                                                                                tCATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATaa                      <  1:406098/140‑1 (MQ=255)

                                                                                                                 cATATCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAAc                     <  2:1305703/140‑1 (MQ=255)

                                                                                                                  atatCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACa                    >  2:636266/1‑140 (MQ=255)

                                                                                                                   tatCCATTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACaa                   <  1:998326/140‑1 (MQ=255)

                                                                                                                        aTTCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCa              >  1:289151/1‑140 (MQ=255)

                                                                                                                          tCAATAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAAg            >  1:1382685/1‑140 (MQ=255)

                                                                                                                             aTAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAAGTCa         <  1:457361/140‑1 (MQ=255)

                                                                                                                             aTAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAAGTCa         <  1:329302/140‑1 (MQ=255)

                                                                                                                              tAGCCCTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAAGTCAt        >  1:781456/1‑140 (MQ=255)

                                                                                                                                  ccTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAAGTCATttta    >  1:884305/1‑140 (MQ=255)

                                                                                                                                   cTTGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAAGTCATtttat   >  2:1096747/1‑140 (MQ=255)

                                                                                                                                    ttGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAAGTCATtttatt  <  2:289151/140‑1 (MQ=255)

                                                                                                                                    ttGACCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAAGTCATtttatt  <  2:781456/140‑1 (MQ=255)

TAAAATAAATAGCCAATCTATTTGCGAAGATAAAGAGTTCGCTGGTTTAATATGTAAGGATAATAGTGGCAGATATTTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAAGTCATTTTATT  >  NC_000913/3623052‑3623323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`