Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,277,879	C→A	D137E (GAC→GAA)	soxR →	DNA‑binding transcriptional dual regulator SoxR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,277,879	0	C	A	100.0%	315.1 / NA	88	D137E (GAC→GAA)	soxR	DNA‑binding transcriptional dual regulator SoxR
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (52/36);  total (52/36)

AGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGA  >  NC_000913/4277746‑4278015                                                                                                                                      |                                                                                                                                         aGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTa                                                                                                                                    >  2:133285/1‑140 (MQ=255)  gCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAg                                                                                                                                   <  1:309674/140‑1 (MQ=255)  gCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAg                                                                                                                                   <  2:767587/140‑1 (MQ=255)  gCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAg                                                                                                                                   >  1:121961/1‑140 (MQ=255)   cTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAgg                                                                                                                                  >  1:285777/1‑140 (MQ=255)   cTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAgg                                                                                                                                  >  1:580109/1‑140 (MQ=255)   cTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAgg                                                                                                                                  >  1:58899/1‑140 (MQ=255)     ttCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGgag                                                                                                                                <  2:180380/140‑1 (MQ=255)      tCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACg                                                                                                                                        >  1:738990/1‑131 (MQ=255)         tCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGagaaga                                                                                                                            <  1:432599/140‑1 (MQ=255)                  cGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCgg                                                                                                                   >  1:1353136/1‑140 (MQ=255)                    cgaagaGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAAGTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGgcg                                                                                                                 >  2:1382598/2‑140 (MQ=255)                    agaagaGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGgcg                                                                                                                 >  1:504349/1‑140 (MQ=255)                      aagaGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCa                                                                                                               <  2:253588/140‑1 (MQ=255)                        gagTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACg                                                                                                             <  1:133285/140‑1 (MQ=255)                         agTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGc                                                                                                            <  2:121961/140‑1 (MQ=255)                              gATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCt                                                                                                       <  2:817221/140‑1 (MQ=255)                              gATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACAGGACGGATGGATTGGTTGTGGCAGCCTTTCGCGCAGTGATTGCCCGCTTCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCt                                                                                                       >  2:1227347/1‑140 (MQ=255)                                 cGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGa                                                                                                    <  2:504349/140‑1 (MQ=255)                                   gcgcATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAg                                                                                                  >  2:660262/1‑140 (MQ=255)                                   gcgcATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAg                                                                                                  <  2:855752/140‑1 (MQ=255)                                   gcgcATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAg                                                                                                  <  2:1082931/140‑1 (MQ=255)                                    cgcATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGa                                                                                                 >  2:102587/1‑140 (MQ=255)                                    cgcATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGa                                                                                                 >  2:242317/1‑140 (MQ=255)                                                 tAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTaa                                                                                    >  2:1357687/1‑140 (MQ=255)                                                  aGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTaaa                                                                                   >  1:314564/1‑140 (MQ=255)                                                  aGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTaaa                                                                                   >  1:101914/1‑140 (MQ=255)                                                   gTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAg                                                                                  >  1:459460/1‑140 (MQ=255)                                                   gTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAg                                                                                  <  2:459460/140‑1 (MQ=255)                                                   gTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAg                                                                                  >  2:1147069/1‑140 (MQ=255)                                                    tGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAgc                                                                                 >  2:188293/1‑140 (MQ=255)                                                    tGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAgc                                                                                 >  1:211934/1‑140 (MQ=255)                                                         cTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCcac                                                                            >  1:248091/1‑140 (MQ=255)                                                         cTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCcac                                                                            >  2:1278337/1‑140 (MQ=255)                                                         cTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCcac                                                                            >  2:619505/1‑140 (MQ=255)                                                         cTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCcac                                                                            >  1:1212432/1‑140 (MQ=255)                                                         cTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCcac                                                                            <  1:1123038/140‑1 (MQ=255)                                                            cGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAg                                                                         >  2:987630/1‑140 (MQ=255)                                                            cGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAg                                                                         >  1:245942/1‑140 (MQ=255)                                                              tGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAggg                                                                       <  1:660262/140‑1 (MQ=255)                                                                             aTGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAgtttgttt                                                        >  1:908505/1‑140 (MQ=255)                                                                             aTGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAgtttgttt                                                        >  2:479956/1‑140 (MQ=255)                                                                             aTGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAgtttgttt                                                        >  1:144191/1‑140 (MQ=255)                                                                              tGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGtttt                                                       >  1:669789/1‑140 (MQ=255)                                                                                   tGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgt                                                  >  2:726075/1‑140 (MQ=255)                                                                                     gTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtct                                                <  2:211934/140‑1 (MQ=255)                                                                                     gTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtct                                                <  1:1147069/140‑1 (MQ=255)                                                                                       tgtgGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtcttt                                              >  2:600313/1‑140 (MQ=255)                                                                                       tgtgGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtcttt                                              >  2:38212/1‑140 (MQ=255)                                                                                       tgtgGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtcttt                                              >  1:486667/1‑140 (MQ=255)                                                                                       tgtgGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtcttt                                              <  1:619505/140‑1 (MQ=255)                                                                                        gtgGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtctttg                                             <  1:742035/140‑1 (MQ=255)                                                                                        gtgGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtctttg                                             >  2:283319/1‑140 (MQ=255)                                                                                        gtgGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtctttg                                             <  2:314564/140‑1 (MQ=255)                                                                                          ggCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTCGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtctttgtc                                           >  2:124347/1‑140 (MQ=255)                                                                                          ggCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtctttgtc                                           <  2:144191/140‑1 (MQ=255)                                                                                           gCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtctttgtct                                          >  2:1150656/1‑140 (MQ=255)                                                                                           gCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtctttgtct                                          >  2:1087623/1‑140 (MQ=255)                                                                                             tGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtctttgtcttt                                        <  2:1212432/140‑1 (MQ=255)                                                                                               ccTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTtct                                      >  1:1302428/1‑140 (MQ=255)                                                                                                cTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTtctc                                     >  2:878107/1‑140 (MQ=255)                                                                                                       gcAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATcc                              <  2:58899/140‑1 (MQ=255)                                                                                                       gcAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATcc                              <  1:878107/140‑1 (MQ=255)                                                                                                       gcAGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATcc                              <  1:987630/140‑1 (MQ=255)                                                                                                         aGTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCg                            >  2:84253/1‑140 (MQ=255)                                                                                                          gtgtTTGCCCGTTGCGTACCCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAATTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGc                           <  2:135357/140‑1 (MQ=255)                                                                                                          gTGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGc                           <  1:242317/140‑1 (MQ=255)                                                                                                           tGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCt                          >  1:1068863/1‑140 (MQ=255)                                                                                                           tGATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCt                          >  2:960990/1‑140 (MQ=255)                                                                                                            gATTGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTg                         <  2:669789/140‑1 (MQ=255)                                                                                                              ttGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGt                       <  2:1293107/140‑1 (MQ=255)                                                                                                               tGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTa                      <  2:285777/140‑1 (MQ=255)                                                                                                               tGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTa                      <  1:1087623/140‑1 (MQ=255)                                                                                                               tGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTa                      <  2:1302428/140‑1 (MQ=255)                                                                                                               tGCCCGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTa                      >  1:1089796/1‑140 (MQ=255)                                                                                                                   cGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTAcaca                  >  2:573973/1‑140 (MQ=255)                                                                                                                   cGTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTAcaca                  >  2:898598/1‑140 (MQ=255)                                                                                                                    gTTGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACag                 <  2:1353136/140‑1 (MQ=255)                                                                                                                     ttGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTg                         <  2:353424/131‑1 (MQ=255)                                                                                                                     ttGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTg                         >  1:353424/1‑131 (MQ=255)                                                                                                                     ttGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTacac                   <  2:127138/137‑1 (MQ=255)                                                                                                                     ttGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTacac                   >  1:127138/1‑137 (MQ=255)                                                                                                                     ttGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACagg                >  2:749961/1‑140 (MQ=255)                                                                                                                     ttGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACagg                >  1:728331/1‑140 (MQ=255)                                                                                                                     ttGCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACagg                <  2:908505/140‑1 (MQ=255)                                                                                                                       gCGTAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACaggag              >  2:1251232/1‑140 (MQ=255)                                                                                                                          tAACCCGGGCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGt           <  2:728331/140‑1 (MQ=255)                                                                                                                                  gCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCg   >  2:1269464/1‑140 (MQ=255)                                                                                                                                  gCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCg   >  1:470472/1‑140 (MQ=255)                                                                                                                                  gCGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCg   >  1:23338/1‑140 (MQ=255)                                                                                                                                   cGAACGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGa  <  2:245942/140‑1 (MQ=255)                                                                                                                                      |                                                                                                                                         AGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGA  >  NC_000913/4277746‑4278015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑