| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,568,504 | 0 | T | G | 29.7% | 173.2 / 12.8 | 92 | T6P (ACC→CCC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| Reads supporting (aligned to +/- strand): ref base T (22/42); new base G (27/0); total (50/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.92e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC > NC_000913/4568369‑4568643 | gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑Gaaaa > 1:159319/1‑140 (MQ=255) gCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑Taaaaaa > 2:224380/1‑140 (MQ=255) aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTg < 1:836487/140‑1 (MQ=255) aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑Gaaaaaaaacgg > 2:118416/1‑136 (MQ=255) cTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTgg < 2:1319841/140‑1 (MQ=255) tGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGc < 1:1304179/140‑1 (MQ=255) aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAt > 1:188991/1‑140 (MQ=255) aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCAt > 1:497386/1‑140 (MQ=255) cATCGGCATTAAAATCACGTACCACCTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATa < 1:797711/140‑1 (MQ=255) cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCATa > 2:151992/1‑140 (MQ=255) gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATaacaaa > 1:635503/1‑140 (MQ=255) gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCATaacaaa > 1:1342743/1‑140 (MQ=255) cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATaacaaac < 2:188991/140‑1 (MQ=255) cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATaacaaac < 2:497386/140‑1 (MQ=255) aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATaacaaaca < 2:1002906/140‑1 (MQ=255) tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAaacaac < 1:1015052/140‑1 (MQ=255) aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTcc < 2:838954/140‑1 (MQ=255) tCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCtt < 2:701540/140‑1 (MQ=255) cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTc < 1:118416/140‑1 (MQ=255) gTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTcc > 2:1218211/1‑140 (MQ=255) aaTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAGAAcccc > 2:416920/1‑140 (MQ=255) aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCa < 2:635503/140‑1 (MQ=255) tGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCaa < 1:660798/140‑1 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACg > 1:1334780/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACg > 1:165500/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAAAAAACAACTCCTTGTTCGGGGAACCCCCACg > 1:712089/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAAAAAAAAACACCTTGTCCGGAGAACCCCAACg > 2:9629/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCAAAAAAAATGTGG‑GTAACAAACAACACCATGGTCAGAAAACCCCCACcgg > 2:118613/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAACATGGCATAAAAAAAAACTCCTTGTCCGGAGAACCCCAACggg > 1:589541/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAACAAAAAACTCCTTTTCCGGAGAACCCCAACggg > 1:27429/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACgggg > 1:885090/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCATAAAAAAAAAATCCTTTTCCGGAGAACCCCAACaggg > 2:140433/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAACAGGCATAAAAAAAAACTCCTTGTCCGGAGAACCCCCAAgggg > 2:660798/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACgggg > 1:926606/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAAAAAAAAAATCCTTGTCCGGGGAACCCCAACgggg > 2:1200332/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAATGGCATAAAAAAAAAAACCTTGTCCGGAGGACCCCAACcggg > 2:1360959/1‑140 (MQ=255) gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGaaaa < 2:885090/140‑1 (MQ=255) gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAAAAAAAAAATCCTTGTTCGGGGAAACCCAACGGGGgaaa > 2:49896/1‑140 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg < 1:49896/140‑1 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg < 1:1379847/140‑1 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg < 1:1360959/140‑1 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGaa > 1:43627/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGAGGGCAAAAAAAAAACTCCTTGTCCGGAGAACCGCAACGGGGAAAAAGaa > 2:1229587/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGGAAACGaa > 1:1131975/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGGGGCATAAAAAAAAACTCCTTGTCCGGAGGACCCCCACCGGGGAAACGaa > 2:797394/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGaaa < 1:843698/140‑1 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGaaa < 1:224380/140‑1 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCATAAAAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAAAGaaa > 1:1427965/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGAGGCATAACAAAAAACTCCTTGTCCGGAGAAACCCAACGGGGGAAAAGaaa > 2:932290/1‑140 (MQ=255) aGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTc < 1:894564/140‑1 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAAAGGCGTAACAAACAACTCCCTGTGCGGAGAAACCCAACAGGGAAAAAGaaaattca > 2:522715/1‑135 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAACAAACAAATCCTTGTCCGGAGAACCCCAACGGGGGAAACGAAAATCaa > 2:123020/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGCGGCATAACAAAAAAATCCTTGTCCGGAGGACCCCAACGGGGGAAAAGAAATTCaa > 2:412416/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑AAAAAAAACGCGGGATAAAAAACAACTCCTTGTCCCGAGAACCCCAACGGGGGAAAAGAAAATCaa > 2:927476/1‑140 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TGAAAAAACGAGGCATAACAAACAACCCCCTGTCCCGAGAACCCCAACGGGGGAAACGAAAATCAATAcc > 2:163524/1‑140 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAAAAAACAAATCCTTTTCCGGAGAACCCCCAACGGGAAAAAGAAAATCAAAAcc > 2:843698/1‑140 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCg < 2:1334780/140‑1 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCg > 1:103065/1‑140 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGGAAACGAAATTCAATACCg > 1:1190711/1‑140 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGGATAAAAAACAACTCCTTTTCCGGAGAACCCCCACGGGGAAAACGAAAATTAATAccc > 2:514611/1‑139 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGGGGCATAACAAAAAAATCCTTTTCCGGGGAACCCCCAAGGGGGAAAAGAAAATTAAAAccc > 2:1165257/1‑139 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGAGGCCTAACAAAAAAACCCCTTTCCCGGGAAACCCCACGGGGGAAAAGAAAATAAAAACCg > 2:4305/1‑140 (MQ=255) cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGt < 2:1342743/140‑1 (MQ=255) cAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAAAGAAAATTAATACCGTCgg > 1:534937/1‑140 (MQ=255) aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGt > 1:240239/1‑140 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa < 1:741248/140‑1 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg < 1:140433/140‑1 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg < 1:932290/140‑1 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAATGGCATAAAAAACAAATCCTTGTCCCGAGAACCCCAACGGGGAAAAAGAAAATCTATACCCCCGGTAATGAAGaaaag > 2:447672/1‑138 (MQ=255) tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg > 1:1138995/1‑140 (MQ=255) aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt < 2:540342/140‑1 (MQ=255) aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt < 2:43627/140‑1 (MQ=255) aCAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga < 1:503012/140‑1 (MQ=255) cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag < 1:163524/140‑1 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAAAAACTCCTTGTCCGGAGAACCCCCACGGGGGAAAAGAAAATCAATACCGTCGGGTATGACGAAAAGCAGGGGGGAAggg > 2:1224968/1‑140 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAACAAAAAACTCCTTTTCCGGAGAACCCCCACGGGGAAAACGAAAATCAAAACCCTCGGGAAAGACGAAAAGCAGGGGAGAAggg > 2:1283381/1‑140 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAAGGGGATAAAAAACAACCCCTTTTCCGGGGAACCCCAACGGGGGAAAAGAAAATCAATAACGGCGGGAATGAAGAAAAGGAGGGGGGAAggg > 2:1137758/1‑140 (MQ=255) aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa < 1:522715/140‑1 (MQ=255) tCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAACGTGGCATAACAAACAACCCCTTGTCCGGAGAACCCCAACGGGGGAAACGAAATTCAATACCGTCGGGAATTAAGAAAAGCAGGGGAGAAGGGCAACGAGAc > 2:1420296/1‑140 (MQ=255) cAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCTATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTa < 1:447672/140‑1 (MQ=255) aGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc < 1:1277319/140‑1 (MQ=255) aGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc < 1:1420296/140‑1 (MQ=255) gCGTGGCGGCATGGCGGG‑GAAAAAAAAGGGGCATAAAAAACAACTCCTTGTCCCGAGAACCCCAACGGGGGAAAAGAAAATCAATAACGTCGGGAATGACGAAAGGCAGGGGGGAAGGGCAACGAGACTGCAAATGTACt > 2:1023396/1‑140 (MQ=255) cGTGGCGGCATGGCGGG‑GAAAAAAAAATGGCATAACAAACAACTCCTTGTCCGGAGAACCCCCACGGGGGAAAAGAAAATCAATACCGCCGGGAATGACGAAAAGCAGGGGAGAAGGGGAACGAGACTGCAAAAGTACTg > 2:935081/1‑140 (MQ=255) gTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGa < 2:926606/140‑1 (MQ=255) aTGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg < 2:103065/140‑1 (MQ=255) ggCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGTAAATGTACTGAATTTCATGTa < 1:1218211/140‑1 (MQ=255) ggCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:935081/140‑1 (MQ=255) ggCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:9629/140‑1 (MQ=255) ggCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:927476/140‑1 (MQ=255) ggCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:1137758/140‑1 (MQ=255) ggCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:151992/140‑1 (MQ=255) cGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt < 2:159319/140‑1 (MQ=255) tAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAc < 2:1190711/140‑1 (MQ=255) | GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC > NC_000913/4568369‑4568643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |