BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,462,087	G→T	E38D (GAG→GAT)	gspI →	Type II secretion system protein GspI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,462,087	0	G	T	100.0%	451.1 / NA	124	E38D (GAG→GAT)	gspI	Type II secretion system protein GspI
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (66/58); total (66/58)

Only 100 of 130 total aligned reads displayed.

AACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGAGCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTGGAACTGGCGCA  >  NC_000913/3461950‑3462217

aaCGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCatcgatcg                                                                                                                                  >  1:1102259/1‑140 (MQ=255)

aaCGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCatcgatcg                                                                                                                                  <  2:1098867/140‑1 (MQ=255)

 aCGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCAtcgatcga                                                                                                                                 >  2:394188/1‑140 (MQ=255)

 aCGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCAtcgatcga                                                                                                                                 <  2:547157/140‑1 (MQ=255)

 aCGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCAtcgatcga                                                                                                                                 <  1:1609865/140‑1 (MQ=255)

     tCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGc                                                                                                                             <  1:1056189/140‑1 (MQ=255)

     tCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGc                                                                                                                             <  1:869323/140‑1 (MQ=255)

     tCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGc                                                                                                                             >  2:1505134/1‑140 (MQ=255)

                 cccGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGc                                                                                                                 >  1:854/1‑140 (MQ=255)

                 cccGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGc                                                                                                                 >  1:450693/1‑140 (MQ=255)

                   cGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTg                                                                                                               <  1:301693/140‑1 (MQ=255)

                   cGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTg                                                                                                               <  1:1385820/140‑1 (MQ=255)

                      ccATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCa                                                                                                            >  1:966055/1‑140 (MQ=255)

                      ccATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCa                                                                                                            >  2:874763/1‑140 (MQ=255)

                      ccATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCa                                                                                                            >  1:604020/1‑140 (MQ=255)

                      ccATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCa                                                                                                            >  1:43555/1‑140 (MQ=255)

                      ccATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCa                                                                                                            >  1:406676/1‑140 (MQ=255)

                        aTGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGTAtt                                                                                                          >  2:602225/1‑140 (MQ=255)

                             caaacaaTCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGa                                                                                                     <  2:67634/140‑1 (MQ=255)

                              aaacaaTCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGAt                                                                                                    <  1:961372/140‑1 (MQ=255)

                              aaacaaTCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGAt                                                                                                    <  1:462211/140‑1 (MQ=255)

                                    gcAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGa                                                                                              <  1:1277023/139‑1 (MQ=255)

                                     cAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGAt                                                                                             >  2:792397/1‑140 (MQ=255)

                                     cAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGAt                                                                                             >  1:711871/1‑140 (MQ=255)

                                         gATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAAcc                                                                                         <  1:792397/140‑1 (MQ=255)

                                           tGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAg                                                                                       <  2:604020/140‑1 (MQ=255)

                                            gACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGc                                                                                      >  1:524601/1‑140 (MQ=255)

                                            gACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGc                                                                                      >  2:1620758/1‑140 (MQ=255)

                                              cacTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCtt                                                                                    >  1:1293122/1‑140 (MQ=255)

                                              cacTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCtt                                                                                    >  1:979472/1‑140 (MQ=255)

                                              cacTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCtt                                                                                    <  2:406537/140‑1 (MQ=255)

                                                cTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCa                                                                                  <  1:1342119/140‑1 (MQ=255)

                                                cTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCa                                                                                  <  1:1351268/140‑1 (MQ=255)

                                                 tGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAg                                                                                 <  2:1102259/140‑1 (MQ=255)

                                                 tGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAg                                                                                 <  2:1259422/140‑1 (MQ=255)

                                                  gCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGt                                                                                >  2:367536/1‑140 (MQ=255)

                                                  gCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGt                                                                                >  1:1386605/1‑140 (MQ=255)

                                                   cTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTc                                                                               >  1:768155/1‑140 (MQ=255)

                                                   cTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTc                                                                               >  1:948426/1‑140 (MQ=255)

                                                    ttGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGTCAGCGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTca                                                                              <  2:86750/140‑1 (MQ=255)

                                                     tGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTcac                                                                             <  2:830437/140‑1 (MQ=255)

                                                     tGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTcac                                                                             <  2:406676/140‑1 (MQ=255)

                                                     tGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTcac                                                                             <  1:1301672/140‑1 (MQ=255)

                                                             tACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGattca                                                                     >  2:642437/1‑140 (MQ=255)

                                                                 ggCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATCCg                                                                 >  2:5608/1‑140 (MQ=255)

                                                                 ggCGATGAGTAATTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCg                                                                 >  1:1698906/1‑140 (MQ=255)

                                                                     aTGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGa                                                             <  1:874763/140‑1 (MQ=255)

                                                                      tGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAg                                                            >  1:1575254/1‑140 (MQ=255)

                                                                       gAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAgg                                                           <  1:1249449/140‑1 (MQ=255)

                                                                           aTTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGaaaa                                                       <  2:516618/140‑1 (MQ=255)

                                                                           aTTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGaaaa                                                       <  2:966055/140‑1 (MQ=255)

                                                                            ttttCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGTATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAac                                                      <  1:602225/140‑1 (MQ=255)

                                                                            ttttCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAac                                                      <  1:1086242/140‑1 (MQ=255)

                                                                                 aCCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACGCGTc                                                 <  1:456566/140‑1 (MQ=255)

                                                                                  ccGCTGTTGCTCTGACTTTTATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCAGTCGGCGTGGAAAACACGTcg                                                >  1:1158736/1‑139 (MQ=255)

                                                                                  ccGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTcc                                                <  1:1620758/140‑1 (MQ=255)

                                                                                  ccGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTcc                                                >  2:810691/1‑140 (MQ=255)

                                                                                  ccGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTc                                                 >  2:326302/1‑139 (MQ=255)

                                                                                  ccGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTc                                                 <  1:326302/139‑1 (MQ=255)

                                                                                       gTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTc                                           <  1:259331/140‑1 (MQ=255)

                                                                                        ttGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACTAGATTCATTCGGCGAGGAAAACACGTCCAGTTCt                                          >  1:1487766/1‑140 (MQ=255)

                                                                                            tctGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCa                                      <  1:1322835/140‑1 (MQ=255)

                                                                                            tctGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCa                                      <  2:524601/140‑1 (MQ=255)

                                                                                            tctGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCa                                      <  2:1390854/140‑1 (MQ=255)

                                                                                            tctGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCa                                      <  2:711871/140‑1 (MQ=255)

                                                                                             ctGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCaa                                     <  2:937715/140‑1 (MQ=255)

                                                                                             ctGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATCCGGCGAGGAAAACACGTCCAGTTCTGGCaa                                     <  1:5608/140‑1 (MQ=255)

                                                                                              tGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCaaa                                    <  2:768155/140‑1 (MQ=255)

                                                                                              tGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCaaa                                    <  2:948426/140‑1 (MQ=255)

                                                                                               gACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAag                                   <  2:1248047/140‑1 (MQ=255)

                                                                                               gACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAag                                   <  2:1020674/140‑1 (MQ=255)

                                                                                                aCTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAaga                                  >  2:1263035/1‑140 (MQ=255)

                                                                                                aCTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAaga                                  >  1:1119060/1‑140 (MQ=255)

                                                                                                 cTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAagag                                 >  1:1093624/1‑140 (MQ=255)

                                                                                                        gAGCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTtaataa                          <  1:810691/140‑1 (MQ=255)

                                                                                                          gCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAAt                        >  2:1020597/1‑140 (MQ=255)

                                                                                                          gCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAAt                        >  2:879210/1‑140 (MQ=255)

                                                                                                          gCAGTATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAAt                        >  2:1303512/1‑140 (MQ=255)

                                                                                                              tATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCg                    <  1:367536/140‑1 (MQ=255)

                                                                                                              tATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCg                    >  1:24281/1‑140 (MQ=255)

                                                                                                              tATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCg                    <  2:140970/140‑1 (MQ=255)

                                                                                                              tATGCAAGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACATCCAGTTCTGGCAAAGAGTTAATAAATGGCg                    <  2:1655811/140‑1 (MQ=255)

                                                                                                                   aaGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAagag               >  2:1672866/1‑140 (MQ=255)

                                                                                                                    aGGGCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGt              >  1:1205592/1‑140 (MQ=255)

                                                                                                                     gggCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTg             >  1:1656339/1‑140 (MQ=255)

                                                                                                                     gggCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTg             >  2:816390/1‑140 (MQ=255)

                                                                                                                     gggCAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTg             >  2:1326055/1‑140 (MQ=255)

                                                                                                                        cAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTGGaa          >  2:1358283/1‑140 (MQ=255)

                                                                                                                        cAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTGGaa          >  2:1055818/1‑140 (MQ=255)

                                                                                                                        cAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTGGaa          >  1:777823/1‑140 (MQ=255)

                                                                                                                        cAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTGGaa          >  1:1536835/1‑140 (MQ=255)

                                                                                                                        cAACGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTGGaa          >  1:366418/1‑140 (MQ=255)

                                                                                                                          aCGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTGGAACt        >  2:1337254/1‑140 (MQ=255)

                                                                                                                          aCGAAATGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTGGAACt        >  1:943730/1‑140 (MQ=255)

                                                                                                                             aaaTGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTGGAACTGgc     <  1:1530021/140‑1 (MQ=255)

                                                                                                                             aaaTGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTGGAACTGgc     <  1:513148/140‑1 (MQ=255)

                                                                                                                              aaTGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTGGAACTGgcg    <  1:566131/140‑1 (MQ=255)

                                                                                                                                tGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTGGAACTGgc     >  1:425488/1‑137 (MQ=255)

                                                                                                                                tGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTGGAACTGgc     <  2:425488/137‑1 (MQ=255)

                                                                                                                                tGCCATCGATCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTGGAACTGGCGCa  >  2:1267657/1‑140 (MQ=255)

AACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGAGCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACACGTCCAGTTCTGGCAAAGAGTTAATAAATGGCGAAGAGTGGAACTGGCGCA  >  NC_000913/3461950‑3462217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`