| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,628,649 | 0 | A | C | 23.9% | 173.9 / 11.8 | 71 | intergenic (+102/+206) | nadR/ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| Reads supporting (aligned to +/- strand): ref base A (44/10); new base C (0/17); total (44/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.14e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACA > NC_000913/4628511‑4628788 | ggAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑Ac < 2:546055/140‑1 (MQ=255) aCTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTg < 1:1184477/140‑1 (MQ=255) tGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑Ca > 2:1107044/1‑140 (MQ=255) ggTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CAc < 1:945073/140‑1 (MQ=255) ggTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CAc < 1:919221/140‑1 (MQ=255) gTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGTTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTg > 2:515564/1‑136 (MQ=255) gTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGTTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTg < 1:515564/136‑1 (MQ=255) tGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACgg > 1:1616952/1‑140 (MQ=255) gggAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTg > 1:369922/1‑140 (MQ=255) agaTGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAACGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAACCCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑CCCTG‑CACGGGTGAcc < 2:987/140‑1 (MQ=255) atgatgGGGGAGCAGAGATACCCGTGATAAAAGTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTGGAAAACCTCTCGGGAAGGGGCTGTCGAGTTA‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCg < 2:793450/140‑1 (MQ=255) gggggAGAAGAGATACCCGTGATGAACCTCCTCAAAGGCGAGGTAAAAAATGATTTTTTTTGATGATTTGAAACCCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAGGTTTTGAAAAA‑CCCTG‑CACGGGTGACCCGCCACg < 2:599943/140‑1 (MQ=255) ggAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAACCCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAGGGTTTGAAAAA‑ACCTG‑CAGGGGTGCCCCGCCACGaaa < 2:468788/140‑1 (MQ=255) aGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAAtt > 2:559504/1‑140 (MQ=255) aGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTAAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAAtt > 1:1059622/1‑140 (MQ=255) cAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGa > 2:273346/1‑140 (MQ=255) cAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGa > 1:1120671/1‑140 (MQ=255) agagATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAACCCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑CCCTG‑CACGGGTGACCCGCCACGAAATTGAg < 1:1544831/140‑1 (MQ=255) agagATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAg < 1:1181789/140‑1 (MQ=255) aagaTAACCGTGATGAACCTGCTAAAAGGCGAGGTATAAAATGATTTTTTTTGATGATTTAAAACCCTCTCTGGAAGAGGCTGTCGAGATA‑AAACAAGGTTTAAAAAA‑CCCTG‑CAGGGGTGACCCGCCACGAAATTGAgg < 2:602186/139‑1 (MQ=255) aTAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATg > 2:1442474/1‑140 (MQ=255) aaCCGTGATAAAACTGCTCAAGGGCGAGGTAAAAAATGAGTTTTTTTGATGAGTTGAAACCCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAGGTTTTAAAAAA‑CCCTG‑CACGGGTGCCCCGCCACGAAATTGAGGATGCt < 2:369922/140‑1 (MQ=255) gTGATGAAACTGCTCAAAGGCGAGGTATAAAATGATTTTTTTTGATGAGTTGAAACCCTCTCTGGAAGAGGCTGTCGAGATA‑AAACAAGGTTTGAAAAA‑CCCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAgg < 1:533097/140‑1 (MQ=255) gatgaAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCt > 2:480302/1‑140 (MQ=255) gatgaAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCt > 1:822972/1‑140 (MQ=255) gatgaAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCt > 2:723004/1‑140 (MQ=255) gatgaAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CAC‑GGTGACCCGCCACGAAATTGAGGATGCTAAGGCtg > 2:789617/1‑140 (MQ=255) atgaAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCtg > 2:381098/1‑140 (MQ=255) tgaAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCtgt > 1:305549/1‑140 (MQ=255) tgaAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCtgt > 1:926999/1‑140 (MQ=255) accTGCTAAAAGGCGAGGTATAAAATGATTTTTTTTGATGAGTTAAAACCCTCTCTGGAAGAGGCTGGCGAGATT‑AAACAAGGTTTAAAAAA‑CCCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCtgttgt < 2:683930/138‑1 (MQ=255) gCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGAc > 2:310141/1‑140 (MQ=255) cTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGAcc > 1:1423300/1‑140 (MQ=255) cTCAAAGGCGAGGCATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGAcc > 1:1114249/1‑140 (MQ=255) aGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGaaa > 1:1108980/1‑140 (MQ=255) taAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCAc > 1:712248/1‑140 (MQ=255) aaaaTGATTTTTTTTGATGAGTTAAAACCCTCTCGGGAAGAGGCTGTCGAAATA‑AAAAAAGTTTTAAAAAA‑CCCTG‑CAGGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCAcg < 2:787916/140‑1 (MQ=255) aGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCAt > 1:757660/1‑140 (MQ=255) aGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCAt > 1:219011/1‑140 (MQ=255) gTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATc > 1:1602857/1‑140 (MQ=255) gTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATc > 2:159435/1‑140 (MQ=255) gTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATc > 2:398285/1‑140 (MQ=255) gTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATc > 1:787916/1‑140 (MQ=255) gTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATc > 2:192078/1‑140 (MQ=255) gTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCCG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATc > 1:396289/1‑140 (MQ=255) tttGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCa > 1:1193047/1‑140 (MQ=255) ttGATGAGTTGAAACCCTCTCGGAAAGAGGCTGTCAAAATA‑AAACAAGTTTTAAAAAA‑CCCGG‑CCGGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCAt < 2:305549/140‑1 (MQ=255) tgatgaGTTAAAACCCTCTCGGGAAGGGGCTGTCGAAATA‑AAACAAGGTTTAAAAAA‑CCCTG‑CACGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCAtt < 2:1423300/140‑1 (MQ=255) tgaGTTGAAACCCTCTTTGGAGGAGGCTTTCGAGATA‑AAAC‑AGGTTTGAAAAACCCCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCgg < 2:747994/140‑1 (MQ=255) tgaGTAAAAACCCTCTGTGGAAGAGGCTGTCGAAATA‑AAACAGGTTTTAAAAAA‑CCCTG‑CGGGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCgg < 2:1386720/140‑1 (MQ=255) ggaGTTAAAACCCTCTCGGAAAGGGGCTGTCGAGATA‑AAACAGGTTTTAAAAAC‑CCCTG‑CGGGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCgg < 2:822972/139‑1 (MQ=255) gaGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGt > 1:1255496/1‑140 (MQ=255) aaaaacCCTCTCTGGAAGAGGCTGTCGAGATA‑AAACAGGTTTTAAAAAA‑CCCTG‑CGGGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTc < 2:47008/138‑1 (MQ=255) cagccTCTCGGGAAGAGGCTGTCGAGATA‑AAACAAGTTTTAAAAAA‑CCCTG‑CAGGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAAt < 2:1338908/137‑1 (MQ=255) ggacagagCTGTCAAGGTTAAAACATGGTTTAAAAAA‑ACGTG‑CGGGGGCGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGc < 2:1114249/133‑1 (MQ=25) ggAAGAGGCTGTCGAGATT‑AAACAAGGTTTAAAAAA‑CCCTG‑CGGGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCg < 1:480302/140‑1 (MQ=255) aaGGGGCTGTCGAGATA‑AAAAAAGGTTTAAAAAA‑CCCTG‑CA‑GGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACg < 1:789617/140‑1 (MQ=38) gagGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGActg > 1:1338908/1‑138 (MQ=255) gagGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGc > 2:1517/1‑140 (MQ=255) gggCTGGCGATATG‑AAACAGGGTGAGAAAAC‑CCCTG‑CCGGGGGGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCt < 2:1616952/139‑1 (MQ=37) ggCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCtt > 2:1157399/1‑140 (MQ=255) gCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTa > 2:231816/1‑140 (MQ=255) gtgtgGAAATA‑AAACAGGGTTTAAAAAA‑CCCTG‑CGGGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTAc < 2:1602857/139‑1 (MQ=37) cTGTCGAGATA‑AAACAAGGTTTAAAAAA‑CCCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTAc < 1:1550584/140‑1 (MQ=255) cTGCCGAAATA‑AAACAGGTTTGGAAAAA‑CCCTG‑CACGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTAc < 1:1583523/140‑1 (MQ=38) tGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTAcc > 2:1401800/1‑140 (MQ=255) ctttcgaaTT‑TAAAAAGGTTTGAAAAA‑ACCTGCCCCGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTAc < 2:219011/133‑1 (MQ=37) tCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACcgc < 1:540866/140‑1 (MQ=255) tCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACcgc > 1:1269402/1‑140 (MQ=255) tCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACcgc > 2:1575028/1‑140 (MQ=255) tCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACcgc > 2:133866/1‑140 (MQ=255) cGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACcgcg > 1:929764/1‑140 (MQ=255) gagaTA‑AAACAAGTTTTGAAAAA‑CCCTG‑CGCGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGt < 1:1693617/140‑1 (MQ=255) gaaataaaaCAAGGTTTAAAAAA‑CCCTG‑CACGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGt < 1:753280/134‑1 (MQ=38) aTT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCtt > 2:1281020/1‑140 (MQ=255) aaaaCAAGTTTTGAAAAA‑CCCTG‑CACGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTAt < 1:434040/139‑1 (MQ=255) ggTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCt > 1:1218039/1‑140 (MQ=255) ggTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCt > 2:1571959/1‑140 (MQ=255) ttttAAAAAA‑CCCTG‑CCGGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa < 1:723004/139‑1 (MQ=37) gTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa < 1:1401800/140‑1 (MQ=255) gTTTAAAAAA‑CCCTG‑CACGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa < 1:1442474/140‑1 (MQ=255) gAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGt > 1:126097/1‑140 (MQ=255) aCCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa > 1:738542/1‑130 (MQ=255) aCCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa < 2:738542/130‑1 (MQ=255) aCCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACa < 1:1571959/140‑1 (MQ=255) aCCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACa < 2:1193047/140‑1 (MQ=255) | GGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATT‑AAACAAGGTTTGAAAAA‑ACCTG‑CACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACA > NC_000913/4628511‑4628788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |