Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,288,477	C→A	pseudogene (438/2525 nt)	yejO ←	adhesin‑like autotransporter YejO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,288,477	0	C	A	100.0%	320.5 / NA	92	pseudogene (438/2525 nt)	yejO	adhesin‑like autotransporter YejO
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (53/39);  total (53/39)

TTCAACTCGCAAACTTCCGCCGTTTTCCAACAACATATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGC  >  NC_000913/2288346‑2288612                                                                                                                                    |                                                                                                                                        ttcAACTCGCAAACTTCCGCCGTTTTCCAACAACATATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGAt                                                                                                                                 >  2:1506576/1‑140 (MQ=255)         gCAAACTTCCGCCGTTTTCCAACAACATATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCgca                                                                                                                         <  1:1182211/140‑1 (MQ=255)          cAAACTTCCGCCGTTTTCCAACAACATATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGAt                                                                                                                                 >  2:537796/1‑131 (MQ=255)          cAAACTTCCGCCGTTTTCCAACAACATATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGAt                                                                                                                                 <  1:537796/131‑1 (MQ=255)                  cgccgTTTTCCAACAACATATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCgcaaatgcaaat                                                                                                                <  2:1330243/140‑1 (MQ=255)                     cgTTTTCCAACAACATATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATccc                                                                                                             <  1:239998/140‑1 (MQ=255)                       ttttCCAACAACATATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATccccc                                                                                                           <  1:1006247/140‑1 (MQ=255)                       ttttCCAACAACATATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATccccc                                                                                                           <  2:176399/140‑1 (MQ=255)                       ttttCCAACAACATATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATccccc                                                                                                           <  2:1030512/140‑1 (MQ=255)                       ttttCCAACAACATATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATccccc                                                                                                           <  1:1687078/140‑1 (MQ=255)                         ttCCAACAACATATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCct                                                                                                         >  2:51789/1‑140 (MQ=255)                           ccAACAACATATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCctct                                                                                                       <  1:1110286/140‑1 (MQ=255)                              acaacaTATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTa                                                                                                    <  2:1212450/140‑1 (MQ=255)                              acaacaTATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTa                                                                                                    <  1:510543/140‑1 (MQ=255)                               caacaTATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGGACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTaa                                                                                                   <  1:948071/140‑1 (MQ=255)                                aacaTATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAAc                                                                                                  <  1:1700716/140‑1 (MQ=255)                                 acaTATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAAcc                                                                                                 <  2:216691/140‑1 (MQ=255)                                 acaTATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAAcc                                                                                                 >  2:1277806/1‑140 (MQ=255)                                     attattAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAAccctgt                                                                                             <  1:1512457/140‑5 (MQ=255)                                     attattAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCa                                                                                             <  1:1578898/140‑1 (MQ=255)                                     attattAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCa                                                                                             <  1:82831/140‑1 (MQ=255)                                     attattAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCAAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCa                                                                                             <  2:1265004/140‑1 (MQ=255)                                          taGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCagtagt                                                                                        >  1:859118/1‑140 (MQ=255)                                          taGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCagtagt                                                                                        >  1:1190985/1‑140 (MQ=255)                                          taGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCagtagt                                                                                        <  1:294635/140‑1 (MQ=255)                                           aGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGtc                                                                                       >  2:1389682/1‑140 (MQ=255)                                            gCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGtcc                                                                                      >  2:57163/1‑140 (MQ=255)                                            gCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGtcc                                                                                      >  2:1056008/1‑140 (MQ=255)                                             cAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGtcct                                                                                     >  1:46824/1‑140 (MQ=255)                                             cAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGtcct                                                                                     >  1:1450858/1‑140 (MQ=255)                                             cAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGtcct                                                                                     >  1:155665/1‑140 (MQ=255)                                             cAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTCGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGtcct                                                                                     >  1:1690409/1‑140 (MQ=255)                                               aTACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGtcctcc                                                                                   >  1:1209238/1‑140 (MQ=255)                                               aTACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGtcctcc                                                                                   >  2:1560535/1‑140 (MQ=255)                                               aTACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGtcctcc                                                                                   >  1:122552/1‑140 (MQ=255)                                                tACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTccc                                                                                  >  2:771126/1‑140 (MQ=255)                                                tACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTccc                                                                                  <  1:652082/140‑1 (MQ=255)                                                tACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTccc                                                                                  >  1:891890/1‑140 (MQ=255)                                                 aCCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCTCCCTCTTTAACCTCCAGTAGTCCTCCCt                                                                                 >  2:1391965/1‑140 (MQ=255)                                                 aCCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCt                                                                                 >  2:868351/1‑140 (MQ=255)                                                 aCCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCt                                                                                 >  1:1153914/1‑140 (MQ=255)                                                     ttCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTc                                                                             >  2:731109/1‑140 (MQ=255)                                                     ttCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTc                                                                             >  2:1054761/1‑140 (MQ=255)                                                     ttCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCACAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTc                                                                             >  1:113017/1‑140 (MQ=255)                                                     ttCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAAGAGCACAGCCTGATGTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTc                                                                             >  2:1660705/1‑140 (MQ=255)                                                            tatCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGGTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCg                                                                      >  1:145987/1‑140 (MQ=255)                                                             atCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGtcct                                                                                     >  1:556110/1‑124 (MQ=255)                                                             atCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGtcct                                                                                     <  2:556110/124‑1 (MQ=255)                                                             atCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGa                                                                     >  1:1395654/1‑140 (MQ=255)                                                             atCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGa                                                                     >  2:1027750/1‑140 (MQ=255)                                                               cGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACa                                                                   >  2:337964/1‑140 (MQ=255)                                                               cGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACa                                                                   >  2:1200887/1‑140 (MQ=255)                                                                 aaCTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACaaa                                                                 >  1:1697753/1‑140 (MQ=255)                                                                   cTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGa                                                               <  2:891890/140‑1 (MQ=255)                                                                     gACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACg                                                             >  2:936473/1‑140 (MQ=255)                                                                     gACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACg                                                             <  1:1697698/140‑1 (MQ=255)                                                                      aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACgg                                                            >  2:88814/1‑140 (MQ=255)                                                                      aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACgg                                                            >  2:1199838/1‑140 (MQ=255)                                                                        cGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGcc                                                          >  2:1551525/1‑140 (MQ=255)                                                                           gagggTTTGTTCCGAATCCCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGccccc                                                       <  2:122552/137‑1 (MQ=255)                                                                           gaCGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGccccc                                                       <  2:1690409/140‑1 (MQ=255)                                                                           gaCGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGccccc                                                       <  1:1199838/140‑1 (MQ=255)                                                                                tttGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATc                                                  >  1:181258/1‑140 (MQ=255)                                                                                tttGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATc                                                  >  1:763861/1‑140 (MQ=255)                                                                                     tCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCttttt                                             >  2:1076928/1‑140 (MQ=255)                                                                                         aaTACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAAc                                         <  1:175351/140‑1 (MQ=255)                                                                                             ccTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGAtt                                     <  1:57163/140‑1 (MQ=255)                                                                                              cTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTa                                    >  2:497111/1‑140 (MQ=255)                                                                                                    ggCGCGCGTGGTTGTTTTAATAGCACCGCCTCATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTACCCTCCAGTAGTCCTCCCTTTTCGATAGCGAAAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGcgcc                              <  2:145987/140‑1 (MQ=255)                                                                                                    ggCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCTCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGcgcc                              <  1:1391965/140‑1 (MQ=255)                                                                                                    ggCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGcgcc                              <  2:1450858/140‑1 (MQ=255)                                                                                                    ggCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGcgcc                              <  2:533223/140‑1 (MQ=255)                                                                                                     gCCCGCGTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGcgccc                             <  1:1019137/140‑1 (MQ=255)                                                                                                        cgcgTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGcgcccgcc                          >  1:1460170/1‑140 (MQ=255)                                                                                                        cgcgTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGcgcccgcc                          >  1:639164/1‑140 (MQ=255)                                                                                                        cgcgTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGcgcccgcc                          <  1:649759/140‑1 (MQ=255)                                                                                                          cgTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTACCCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGcgcc                              <  1:1336365/134‑1 (MQ=255)                                                                                                          cgTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGcgcc                              >  2:1336365/1‑134 (MQ=255)                                                                                                          cgTGGTTGTTTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCtt                        >  1:1367625/1‑140 (MQ=255)                                                                                                          cgTGGTTG‑TTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCttt                       >  2:1295358/1‑140 (MQ=255)                                                                                                              gttgttTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAAt                    <  2:970847/140‑1 (MQ=255)                                                                                                               ttgttTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATc                   >  2:945991/1‑140 (MQ=255)                                                                                                                tgttTTAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                  <  2:1460170/140‑1 (MQ=255)                                                                                                                  ttttAATAGCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTg                <  1:497111/140‑1 (MQ=255)                                                                                                                          gCACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGTCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCAtt        >  2:442718/1‑140 (MQ=255)                                                                                                                           cACCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTc       >  2:397195/1‑140 (MQ=255)                                                                                                                            aCCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg      >  2:11879/1‑140 (MQ=255)                                                                                                                            aCCGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg      >  2:906223/1‑140 (MQ=255)                                                                                                                             ccGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGc     >  1:190116/1‑140 (MQ=255)                                                                                                                              cGCCTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCt    <  2:1697753/140‑1 (MQ=255)                                                                                                                                ccTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgc  >  2:1117634/1‑140 (MQ=255)                                                                                                                                ccTGATTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgc  >  2:115663/1‑140 (MQ=255)                                                                                                                                    |                                                                                                                                        TTCAACTCGCAAACTTCCGCCGTTTTCCAACAACATATTATTAGCAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGC  >  NC_000913/2288346‑2288612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑