BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,557,755	G→T	P95Q (CCG→CAG)	ddpF ←	putative D,D‑dipeptide ABC transporter ATP‑binding subunit DdpF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,557,755	0	G	T	100.0%	386.9 / NA	106	P95Q (CCG→CAG)	ddpF	putative D,D‑dipeptide ABC transporter ATP‑binding subunit DdpF
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (69/37); total (69/37)

Only 100 of 108 total aligned reads displayed.

GAGGCAGGCGGTCGAGATACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCTTTTGCCGCAGCCTGAC  >  NC_000913/1557618‑1557889

gAGGCAGGCGGTCGAGATACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGa                                                                                                                                      >  1:1760512/1‑140 (MQ=255)

 aggcaggcGGTCGAGATACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGAt                                                                                                                                     <  2:1675318/140‑1 (MQ=255)

   gcaggcGGTCGAGGTACTCCGGACGAATACCCACCTGCACAGCCAACTTCTCTGCGAACGCGCGCCTCTGTTCTTAACTACTACGCTTAGCTATCCAGACCGGTTCTCTGATGATGCGCCACACCGTTAAGCGCTGTTTa                                                                                                                                   >  2:1563338/1‑140 (MQ=255)

   gcaggcGGTCGAGATACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTa                                                                                                                                   >  2:1800435/1‑140 (MQ=255)

     aggcGGTCGAGATACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAg                                                                                                                                 >  1:317833/1‑140 (MQ=255)

     aggcGGTCGAGATACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAg                                                                                                                                 >  1:2005925/1‑140 (MQ=255)

        cGGTCGAGATACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGa                                                                                                                              >  1:862203/1‑140 (MQ=255)

         ggTCGAGATACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTGATACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGaa                                                                                                                             <  1:1800435/140‑1 (MQ=255)

          gTCGAGATACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAag                                                                                                                            <  2:1024351/140‑1 (MQ=255)

                gtACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCg                                                                                                                      <  1:313881/139‑1 (MQ=255)

                aTACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCg                                                                                                                      >  2:780237/1‑140 (MQ=255)

                  aCTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCggg                                                                                                                    <  2:317833/140‑1 (MQ=255)

                  aCTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCggg                                                                                                                    <  2:862203/140‑1 (MQ=255)

                    tCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTc                                                                                                                  <  1:1401194/140‑1 (MQ=255)

                     ccGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCgg                                                                                                                     >  2:212141/1‑136 (MQ=255)

                     ccGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCgg                                                                                                                     <  1:212141/136‑1 (MQ=255)

                     ccGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTcc                                                                                                                 >  2:1408389/1‑140 (MQ=255)

                     ccGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTcc                                                                                                                 >  2:1425537/1‑140 (MQ=255)

                     ccGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTcc                                                                                                                 >  2:894190/1‑140 (MQ=255)

                       ggACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTg                                                                                                               >  2:1848916/1‑140 (MQ=255)

                           gAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAac                                                                                                           <  1:816919/140‑1 (MQ=255)

                           gAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAac                                                                                                           <  1:894190/140‑1 (MQ=255)

                             aTACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAacac                                                                                                         <  1:1848916/140‑1 (MQ=255)

                             aTACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAacac                                                                                                         >  1:856645/1‑140 (MQ=255)

                               aCCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCa                                                                                                       <  1:449487/140‑1 (MQ=255)

                                cccACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCAt                                                                                                      <  1:780237/140‑1 (MQ=255)

                                     cTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCa                                                                                                 >  2:766487/1‑140 (MQ=255)

                                      tGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATTCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCAt                                                                                                <  1:1986877/140‑1 (MQ=255)

                                        cacaGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATaa                                                                                              >  1:649752/1‑140 (MQ=255)

                                        cacaGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGC‑GGTCCTGAAACACCATCTGCATAAt                                                                                             <  1:1100261/140‑1 (MQ=255)

                                               aaCTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTtg                                                                                       >  2:2045062/1‑140 (MQ=255)

                                               aaCTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTtg                                                                                       <  2:1760512/140‑1 (MQ=255)

                                               aaCTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTtg                                                                                       <  2:1752646/140‑1 (MQ=255)

                                                     tctGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGcc                                                                                 >  2:1275834/1‑140 (MQ=255)

                                                     tctGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGcc                                                                                 <  2:1334102/140‑1 (MQ=255)

                                                       tGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACGCCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAg                                                                               <  1:309432/140‑1 (MQ=255)

                                                       tGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGcc                                                                                 >  1:952443/1‑138 (MQ=255)

                                                       tGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAg                                                                               >  1:1895285/1‑140 (MQ=255)

                                                       tGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAg                                                                               >  2:1748097/1‑140 (MQ=255)

                                                       tGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAg                                                                               >  1:1836596/1‑140 (MQ=255)

                                                       tGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAg                                                                               <  1:1425537/140‑1 (MQ=255)

                                                       tGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAg                                                                               >  2:682710/1‑140 (MQ=255)

                                                            aCGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAATCACCATCTGCATAATGCGTTGTGAGCCAGAACgg                                                                          <  2:2005925/140‑1 (MQ=255)

                                                            aCGCTCGCCGCTGTTGTTCACTACTAAGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACgg                                                                          >  2:1273651/1‑140 (MQ=255)

                                                               cTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATg                                                                       <  1:308794/140‑1 (MQ=255)

                                                                         ttgttCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTa                                                                     <  1:757334/132‑1 (MQ=255)

                                                                         ttgttCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTa                                                                     >  2:757334/1‑132 (MQ=255)

                                                                            ttCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGc                                                          >  2:821809/1‑140 (MQ=255)

                                                                              cACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTc                                                        >  2:1458572/1‑140 (MQ=255)

                                                                                ctactaCGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCgg                                                      <  1:682710/140‑1 (MQ=255)

                                                                                  actacGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGtt                                                    <  1:766487/140‑1 (MQ=255)

                                                                                   ctacGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTg                                                   >  1:249617/1‑140 (MQ=255)

                                                                                   ctacGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTg                                                   >  2:765412/1‑140 (MQ=255)

                                                                                   ctacGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTg                                                   <  1:821809/140‑1 (MQ=255)

                                                                                   ctacGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTg                                                   >  2:855752/1‑140 (MQ=255)

                                                                                        cTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTgcagca                                              <  2:367821/140‑1 (MQ=255)

                                                                                        cTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTgcagca                                              <  1:1020173/140‑1 (MQ=255)

                                                                                           aGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATAc                                           >  2:810385/1‑140 (MQ=255)

                                                                                           aGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATAc                                           >  1:1529486/1‑140 (MQ=255)

                                                                                           aGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATAc                                           <  2:1529486/140‑1 (MQ=255)

                                                                                             cTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATAccc                                         >  2:220960/1‑140 (MQ=255)

                                                                                             cTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATAccc                                         >  1:541232/1‑140 (MQ=255)

                                                                                                tCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCAtt                                      >  2:852323/1‑140 (MQ=255)

                                                                                                     agCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAg                                 >  1:108040/1‑140 (MQ=255)

                                                                                                     agCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAg                                 >  2:1938425/1‑140 (MQ=255)

                                                                                                      gCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGc                                <  1:1748097/140‑1 (MQ=255)

                                                                                                       cGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCt                               >  2:1430948/1‑140 (MQ=255)

                                                                                                       cGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCt                               <  1:1873269/140‑1 (MQ=255)

                                                                                                       cGGTTCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCt                               >  1:1225946/1‑140 (MQ=255)

                                                                                                          ttCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCtgtg                            >  2:1917178/1‑140 (MQ=255)

                                                                                                          ttCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCtgtg                            >  1:303406/1‑140 (MQ=255)

                                                                                                          ttCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCtgtg                            >  1:79559/1‑140 (MQ=255)

                                                                                                          ttCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCtgtg                            >  2:1033719/1‑140 (MQ=255)

                                                                                                          ttCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCtgtg                            >  2:1111686/1‑140 (MQ=255)

                                                                                                          ttCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCtgtg                            >  2:1744229/1‑140 (MQ=255)

                                                                                                          ttCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCtgtg                            >  2:1614526/1‑140 (MQ=255)

                                                                                                          ttCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCtgt                             >  1:485931/1‑139 (MQ=255)

                                                                                                          ttCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCtgt                             <  2:485931/139‑1 (MQ=255)

                                                                                                          atCTGTGATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCtgtg                            >  2:1845574/2‑140 (MQ=255)

                                                                                                              gtgATGATGCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAg                        <  2:303406/140‑1 (MQ=255)

                                                                                                               tgatgaTGCACCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAgg                       >  1:103440/1‑140 (MQ=255)

                                                                                                                    atgCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAgg                       >  1:1573248/1‑135 (MQ=255)

                                                                                                                    atgCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAgg                       <  2:1573248/135‑1 (MQ=255)

                                                                                                                    atgCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCt                  >  1:1887285/1‑140 (MQ=255)

                                                                                                                    atgCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCt                  >  1:672957/1‑140 (MQ=255)

                                                                                                                    atgCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCt                  >  1:1057978/1‑140 (MQ=255)

                                                                                                                    atgCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCt                  >  1:562097/1‑140 (MQ=255)

                                                                                                                    atgCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCt                  >  1:228416/1‑140 (MQ=255)

                                                                                                                    atgCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCt                  >  1:1019469/1‑140 (MQ=255)

                                                                                                                    atgCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCt                  >  2:376152/1‑140 (MQ=255)

                                                                                                                    atgCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCt                  >  1:1427791/1‑140 (MQ=255)

                                                                                                                    atgCGCCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCt                  >  1:1852670/1‑140 (MQ=255)

                                                                                                                       cgcCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCtttt               >  2:639656/1‑140 (MQ=255)

                                                                                                                       cgcCACACCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCtttt               >  1:218952/1‑140 (MQ=255)

                                                                                                                          cacaCCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCTTTTGcc            <  2:218952/140‑1 (MQ=255)

                                                                                                                          cacaCCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCTTTTGcc            <  2:1153022/140‑1 (MQ=255)

                                                                                                                            cacCGGTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCTTTTGCCGc          >  2:365346/1‑140 (MQ=255)

                                                                                                                                 gTAAGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCTTTTGCCGCAGCCt     >  1:1912567/1‑140 (MQ=255)

                                                                                                                                   aaGNNNTGANTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCTTTTGCCGCAGCCTGa   <  2:1019469/140‑1 (MQ=255)

                                                                                                                                    aGCGCTGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCTTTTGCCGCAGCCTGAc  >  1:1969462/1‑140 (MQ=255)

GAGGCAGGCGGTCGAGATACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCTTTTGCCGCAGCCTGAC  >  NC_000913/1557618‑1557889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`