| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3588435 | 146 (0.980) | 6 (0.040) | 5/252 | 10.3 | 3.4% | coding (746/1071 nt) | ugpC | sn‑glycerol 3‑phosphate ABC transporter ATP binding subunit |
| ? | NC_000913 | = 3589209 | 209 (1.540) | coding (819/846 nt) | ugpE | sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpE | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3588287‑3588435‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtgccttcgt‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACCAAAAGCTGGGATGGTAAAACCCAGGTCATTAAACCGCTGACCCTTGATGTGGCGGATGGCGAATTTATCGTGATGGTCGG < NC_000913/3589209‑3589071 CACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCTGTCCAGTTCGAAATGCG < 2:855254/140‑1CACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCG < 1:226516/140‑1 CATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGC < 2:678653/140‑1 TCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCT > 1:879423/1‑140 TCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCT < 2:2010619/140‑1 TCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGC > 1:2209562/1‑138 TCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGC < 2:2209562/138‑1 CGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTT < 2:473986/140‑1 GTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCG > 1:1863387/1‑140 GTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCG > 2:1925068/1‑140 AGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAG < 2:1453928/140‑1 AGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAG > 1:1453928/1‑140 TTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAG < 2:2046404/140‑1 GTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACCAAAAGCTGGGATGGTAA > 1:2289189/1‑140 AGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACC‑AAAGCTGGGATGGTAAAACCCAGGTCATTAAACCG > 2:2406123/1‑140 CGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACC‑AAAGCTGGGATGGTAAAACCCAGGTCATTAAACCGCT < 1:2406123/140‑1 TGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACCAAAAGCTGGGATGGTAAAACCCAGGTCATTAAACCGCTGACCCTTGATGTGGCGGATGGCGAATTTATCGTG > 2:1664118/1‑140 TGCCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACCAAAAGCTGGGATGGTAAAACCCAGGTCATTAAACCGCTGACCCTTGATGTGGCGGATGGCGAATTTATCGTG < 2:1005095/140‑1 CCTTCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACCAAAAGCTGGGATGGTAAAACCCAGGTCATTAAACCGCTGACCCTTGATGTGGCGGATGGCGAATTTATCGTGAT > 2:143032/1‑140 TCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACCAAAAGCTGGGATGGTAAAACCCAGGTCATTAAACCGCTGACCCTTGATGTGGCGGATGGCGAATTTATCGTGATGGT < 2:2039474/140‑1 TCGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACCAAAAGCTGGGATGGTAAAACCCAGGTCATTAAACCGCTGACCCTTGATGTGGCGGATGGCGAATTTATCGTGATGGT < 2:2239761/140‑1 CGT‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACCAAAAGCTGGGATGGTAAAACCCAGGTCATTAAACCGCTGACCCTTGATGTGGCGGATGGCGAATTTATCGTGATGGTC > 1:2517120/1‑140 T‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACCAAAAGCTGGGATGGTAAAACCCAGGTCATTAAACCGCTGACCCTTGATGTGGCGGATGGCGAATTTATCGTGATGGTCGG > 2:1006857/1‑140 T‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACCAAAAGCTGGGATGGTAAAACCCAGGTCATTAAACCGCTGACCCTTGATGTGGCGGATGGCGAATTTATCGTGATGGTCGG > 2:2472495/1‑140 CACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3588287‑3588435‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtgccttcgt‑‑‑‑‑GCGCGGCCTGGTCGATAGTGAGAAATAAGATGGCAGGACTGAAATTACAGGCAGTAACCAAAAGCTGGGATGGTAAAACCCAGGTCATTAAACCGCTGACCCTTGATGTGGCGGATGGCGAATTTATCGTGATGGTCGG < NC_000913/3589209‑3589071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |