| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,435,727 | 0 | G | A | 25.0% | 112.5 / 23.7 | 56 | intergenic (‑108/+33) | uspF/ompN | nucleotide binding filament protein/outer membrane porin N |
| Reads supporting (aligned to +/- strand): ref base G (41/1); new base A (0/14); total (41/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.58e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGT > NC_000913/1435596‑1435860 | aGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTGTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGcc > 2:1428312/1‑140 (MQ=255) gAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATaa > 2:691493/1‑140 (MQ=255) gAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATaa > 2:1492700/1‑140 (MQ=255) aaTCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAAc > 1:896488/1‑140 (MQ=255) cGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGc > 1:818351/1‑140 (MQ=255) gTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCg > 2:1438120/1‑140 (MQ=255) gTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCg > 2:1847039/1‑140 (MQ=255) taaaaaacCCTCTTTTTTTAGTATCCGCAAAAAGTGAAACGCC‑AGATGACTTTTTTTGTGTAATGAGGGAGTTCACTTTTTTATTTT‑AAATAAAAGGAGAAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCagga < 2:23471/136‑1 (MQ=255) taaaaaacCCCCCTTTTTTAGTATCCGCA‑AAATGATAACCCCAAGTTCTCCTTTTTTGTGGAAGCGCGAGGTTAACATTTTTAATTG‑ACCTAAAGGGAGAAGGAATAAGCAAAAAAGGTCCGCCATAACAGCGGGCagga < 2:1636560/136‑1 (MQ=255) tCATAAACCCTCTTGTTTTAGTACCCGAATAAAGTGTACCGCC‑AAATGACTTTTTTTGTGTAATGACGGAGTTCACTTTTTTAATTT‑AAATAAAAGGAGAAAGAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCagga < 2:921556/140‑1 (MQ=255) aaacCCTCTTGTTTTATTACCCTAATAAGTTATACCCCC‑AGATGACTTTTTTTGTTGAAGGACGGATTACACATTTTTAATAA‑AGAGAAAAGGAGAAAAAAAAAAAAAAAAAGCCCCGCCATAACAGCGGGCAGGAGGAt < 2:36548/140‑1 (MQ=255) aaaaCCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGAt > 2:1117482/1‑140 (MQ=255) aCCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTa > 1:85068/1‑140 (MQ=255) aCCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTa > 1:1574286/1‑140 (MQ=255) ctttttttttAGTATCCGAAAAAAGTGAAACCCC‑AGATGACTTTTTTTGTGAAATGACGGAGTTCATTTTTTAATTTT‑AGAAAAAAGGAGAAAAAAAAAAAAAAAAAACCCCGCCATAACAGCGGGCAGGAGGATTTAGa < 2:685691/134‑1 (MQ=255) ctctttttttAGTATCCGAATAAAGTGTAGCGCA‑AGATGCCTTTTTTTGTGAAATGAGGGATTCCAATTTTTTAATTA‑AAAAAAAGGGAGAAAAAATAAGAAAAAAAGCCCCGCCATAACAGCGGGCAGGAGGATTTAGa < 2:1428890/134‑1 (MQ=255) ctcctGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACTTTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGa > 2:1651981/1‑140 (MQ=255) ctcctGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGa > 2:1843516/1‑140 (MQ=255) ctcctGTTTTAGTATCCGCATAAAGCGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACACCGGGCAGGAGGATTTAGa > 2:1177031/1‑140 (MQ=255) tcctGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGaa > 2:827368/1‑140 (MQ=255) cctGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAAc > 2:1762747/1‑140 (MQ=255) cctGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAAc > 1:842214/1‑140 (MQ=255) cctGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAAc > 2:1918046/1‑140 (MQ=255) ctGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACt > 2:1305415/1‑140 (MQ=255) ttttAGTACCCGCAAAATTTGTAACCCA‑AAAAGACTTTTTTGGTAAAAGGACGGATTTCAATTTTTTAATTA‑AAATAAAGGAAGAAAAAAAAAGAAAAAAAGGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGAt < 2:818351/140‑1 (MQ=255) tAGTCTCCGAATAAGGTGTACCGCC‑AGATGACTTTTTTTGTGTAAGGAGGGAGTTCA‑TTTTTTAATTT‑AGATAAAGGGAGGAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAAc < 2:939034/140‑1 (MQ=255) aGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAAc > 1:52801/1‑140 (MQ=255) aGTATCCGAAAAAAGTGTAACGCA‑AGATGACTTTTTTTGTGTAATGAGGGATTTCATTTTTTTAATTT‑AAAAAAAAGGAGAAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAAc < 2:1709371/140‑1 (MQ=255) aGTATCCGAAAAAAGTGTAACCCA‑AGATGACATTTTTTGTGTAATGGCGGATTTCATTTTTTAAATTT‑AGAAAAAAGGAGGAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAAc < 2:1897235/140‑1 (MQ=255) cGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGAcc > 2:1342945/1‑140 (MQ=255) cGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGAcc > 1:418161/1‑140 (MQ=255) aaaGTATAACGCA‑AGATGACATTTTTTGTGTAATGCCGGAGTTCATTTTTTAAATTT‑AAAAAAAGGGAGGAAAAAAAAGAAAAAAACCCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAg < 2:1294998/140‑1 (MQ=255) aGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCg > 1:1717226/1‑140 (MQ=255) gtAACGCA‑AGATGACTTTTTTTGTGTAATGACGGATTTCACATTTTTAATTT‑AGAAAAAAGGAGAAAAAAAAAGAAAAAAAACCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACa < 2:1637863/140‑1 (MQ=255) tAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACaa > 1:1458333/1‑140 (MQ=255) tAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACaa > 1:647269/1‑140 (MQ=255) aaCGCC‑AGATGACATTTTTTGGGTAAAGACGAACTACAC‑TTTTTAATTTAAGATCAAAGGAGAAAAAACAAGAAAAAAAGGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAat < 2:1764729/140‑1 (MQ=255) aaCGCA‑AGATGACTTTTTTTGTATAATGAGGGAGTTCATTTTTTTAATTT‑AGAAAAAGGGAGAAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAat < 2:1458333/140‑1 (MQ=255) aCGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAata > 1:1544469/1‑140 (MQ=255) cGCC‑AGATAACTTTTTTTGTATAATGACGGAGTCCATATTTTAAATTA‑AGATAAAAGGAGAAAAAATAAAAAAAAAAGCCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAatat < 2:1568429/140‑1 (MQ=255) cGCA‑AGATGACTTTTTTTGTGTAATGAGGGATTTCATATTTTTAATTA‑AAACAAAAGGAGAAAAAAAAACAAAAAAAACCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAatat < 2:1191552/140‑1 (MQ=255) c‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATatcat > 2:1736454/1‑140 (MQ=255) gATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATatcattg > 1:770332/1‑138 (MQ=255) gATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCg > 1:896248/1‑140 (MQ=255) gATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCg > 1:436101/1‑140 (MQ=255) gATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCg > 1:1175683/1‑140 (MQ=255) gATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCg > 1:1112752/1‑140 (MQ=255) aTGACTTTTTTTGTGAAATGAGGGATTTCATTTTTTTATTTA‑AAAAAAAAGGAGAAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCgg < 2:1544469/140‑1 (MQ=255) aTGACTTTTTTTGTGAAATGACGGATTTCACATTTTTAATTT‑AGAAAAAAGGAGAAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCgg < 2:896248/140‑1 (MQ=255) aTGACATTTTTTGTGAAAGGAGGGATTTCACTTTTTTAATTA‑AGAAAAAAGGAGAAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCgg < 2:418161/140‑1 (MQ=255) tttttttGTGAAATGACGGATTTCACTTTTTTAATTA‑AAAAAAAAGGAGAAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTagag < 2:647269/138‑1 (MQ=255) ccTTTTTGTATAATGACGGAGTTCATTTTTTTAATAG‑AAACCAAAGGAGAAAAAATAAAAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTagag < 1:263759/139‑1 (MQ=255) acTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTagag > 2:1276068/1‑140 (MQ=255) tAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTgg > 1:1940065/1‑140 (MQ=255) aaaTGAGGGATTTCATATTTTTAATTA‑AGAAAAAAGGAGAAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTgg < 2:1112752/139‑1 (MQ=255) aaaTGAGGGAGTTCACATTTTTAATTA‑AGATAAAAGAAGAAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTgg < 1:1918046/139‑1 (MQ=255) aaaTGACGGAGTCCATTTTTTTAATTT‑AGAAAAAAGGAGAAAAAAAAAGAAAAAAAGGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTgg < 2:896488/139‑1 (MQ=255) aTGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCa > 2:1064055/1‑140 (MQ=255) aTGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACCGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCa > 2:495887/1‑140 (MQ=255) ggtttCATATTTTTAATTT‑AAATAAAAGGAGGAAAAAAAAGCAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAg < 1:245800/137‑1 (MQ=255) gAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAg > 1:1823116/1‑140 (MQ=255) ttcatttttttAATTA‑AGAAAAAAGGAGAAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAg < 2:1823116/134‑1 (MQ=255) ttCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAg > 2:432321/1‑140 (MQ=255) attttgaaaTTG‑AGATAAGAGGATGAACAATAAGCAAAAAATGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGt < 2:1898289/133‑1 (MQ=255) ttttAATTT‑AAAAAAAAGGAGAAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCAt < 1:54201/140‑1 (MQ=255) ttttAATTA‑AGAAAAAAGGAGGAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCAt < 1:407437/140‑1 (MQ=255) tttaaattt‑aaaTAAAAGGAGAAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCAt < 1:1843516/140‑1 (MQ=255) gATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCaa > 2:1392485/1‑140 (MQ=255) aTCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAAc > 1:30751/1‑140 (MQ=255) agggagaaAGAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGt < 2:842214/138‑1 (MQ=255) aagaagGAAAAAAAAGCAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAACTGTCATCTTCATCCAACAGGt < 1:1177031/140‑1 (MQ=255) aagaagAAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGt < 1:1738654/140‑1 (MQ=255) aaGGAGAAAAAAAAAGCAAAAAAGGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGt < 1:1117482/140‑1 (MQ=255) aaGGAGAAAAAAAAAGAAAAAAAACCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGt < 2:30751/140‑1 (MQ=255) aaGGAGAAAAAAAAAAAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGt < 2:1574286/140‑1 (MQ=255) aaGGAGAAAAAAAAAAAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGt < 2:85068/140‑1 (MQ=255) ggagaaAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTg < 1:1110030/140‑1 (MQ=255) gaagaaTAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGAttt > 1:1379244/1‑140 (MQ=255) gaagaaTAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGAttt > 1:1048129/1‑140 (MQ=255) tAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGt < 1:1736454/140‑1 (MQ=255) | AGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCC‑AGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTT‑AGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGT > NC_000913/1435596‑1435860 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |