Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,926,3660AC20.4% 267.6 / 24.3 108G30G (GGT→GGG) mioCflavoprotein MioC
Reads supporting (aligned to +/- strand):  ref base A (68/18);  new base C (0/22);  total (68/40)
Fisher's exact test for biased strand distribution p-value = 2.33e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 120 total aligned reads displayed.

TTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGT  >  NC_000913/3926231‑3926503
                                                                                                                                         |                                                                                                                                          
ttCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCg                                                                                                                                       <  1:1836147/140‑1 (MQ=255)
         tGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGCCCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCa                                                                                                                              <  1:1143126/140‑1 (MQ=255)
          gCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAg                                                                                                                             >  1:924470/1‑140 (MQ=255)
          gCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAg                                                                                                                             >  1:111656/1‑140 (MQ=255)
          gCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAg                                                                                                                             >  1:1268772/1‑140 (MQ=255)
          gCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAg                                                                                                                             >  1:1473945/1‑140 (MQ=255)
          gCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAg                                                                                                                             >  2:599257/1‑140 (MQ=255)
           cTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGc                                                                                                                            >  1:34136/1‑140 (MQ=255)
           cTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGc                                                                                                                            >  1:1714764/1‑140 (MQ=255)
              cATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCttt                                                                                                                         >  1:120662/1‑140 (MQ=255)
               aTAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCtttt                                                                                                                        <  1:1537834/140‑1 (MQ=255)
                 agaaaggagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGGGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCa                                                                                                                      <  1:1243073/140‑1 (MQ=255)
                   aaaggagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCAAACAGCGGCCCGTGCAGCTTTTC‑GGTGTTAAAA‑CCCGCCTCTTCCAGCTTTTCAGc                                                                                                                    <  2:1878306/140‑1 (MQ=255)
                     aggagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCa                                                                                                                  >  1:495989/1‑140 (MQ=255)
                     aggagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCa                                                                                                                  >  2:248927/1‑140 (MQ=255)
                     aggagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCa                                                                                                                  >  2:280659/1‑140 (MQ=255)
                     aggagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCa                                                                                                                  >  2:61439/1‑140 (MQ=255)
                     aggagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTAACGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCa                                                                                                                  >  2:1320843/1‑140 (MQ=255)
                       gagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAgg                                                                                                                <  1:280659/140‑1 (MQ=255)
                         gaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGCCCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGgtg                                                                                                              <  2:1015425/140‑1 (MQ=255)
                         aaaaggTTGTCCGGAATATCTCCGGCCCCGTGGGTGGAGCTGATACCCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCAAACAGCGGACGGTGCAGCGTTTG‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGgtg                                                                                                              <  2:1620495/139‑1 (MQ=255)
                          aaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGgtgt                                                                                                             <  1:1540218/140‑1 (MQ=255)
                          aaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGgtgt                                                                                                             >  1:1798849/1‑140 (MQ=255)
                          aaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGgtgt                                                                                                             >  2:781789/1‑140 (MQ=255)
                          aaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑GCTTCTAACAGCGGACCGCGCAGCGTTTC‑GGCGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCCGgtgt                                                                                                             >  2:1685411/1‑140 (MQ=255)
                           agggTTGCCGGGAATATCTCCGGCCCCGTGGGGGGAGCTGATACCCAGCCAGATCCCTGAGGCAGGTAAA‑TTTTCTAACGGCGGGCCGTGCAGCTTTTC‑GGTGGTAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGtt                                                                                                            <  2:1366362/138‑1 (MQ=255)
                             ggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGAAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCt                                                                                                          <  1:1666909/140‑1 (MQ=255)
                                tGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCt                                                                                                       <  1:781789/140‑1 (MQ=255)
                                 gTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTa                                                                                                      >  1:1350682/1‑140 (MQ=255)
                                 gTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTa                                                                                                      >  2:1189040/1‑140 (MQ=255)
                                 gTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTa                                                                                                      >  2:860163/1‑140 (MQ=255)
                                  tCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTAc                                                                                                     <  1:1189040/140‑1 (MQ=255)
                                       aaTACCTCCGGCCCGGGGGGGGGGGCTGATACCCAGCCGGATCCCGGGGGAAGGTAAT‑TCTTCTCAAAGGGCACCGTGACGCTTTTC‑GGTGAAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATAtt                                                                                                <  2:1905611/140‑1 (MQ=255)
                                            ctcCGGCACGGGGGGTGGAGCTGATAACCAGCCAGACCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGCCCGTGCGGCGTTTC‑GGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCa                                                                                           <  2:120662/140‑1 (MQ=255)
                                                 gCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCAccgcc                                                                                      >  2:290676/1‑140 (MQ=255)
                                                 gCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCAccgcc                                                                                      >  1:646210/1‑140 (MQ=255)
                                                 gCACCGTGGGGGGAGCTAATACCCACCCAGACCCTGGGGGCGGGAAAA‑TTTTCAAACGGGGGCCGGGGCAGTTTTGC‑GGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCAccgcc                                                                                      <  2:358887/140‑1 (MQ=255)
                                                   aCCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGa                                                                                    >  2:1084293/1‑140 (MQ=255)
                                                     cGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAgg                                                                                  >  1:532742/1‑140 (MQ=255)
                                                       tgggtggAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAgggg                                                                                >  2:1201981/1‑139 (MQ=255)
                                                       tgggtggAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGt                                                                                >  1:672615/1‑140 (MQ=255)
                                                               gCTGATACCCGGCCAGCCCCCGGAGGCGGTTAAT‑TTTTCTAACGGGGGCCCGGGGTGCGTTTG‑GGTGG‑AAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCt                                                                       <  2:1701178/140‑1 (MQ=255)
                                                                cTGTTAACCAGCCAAACCCCTGGGGAAGGTAAA‑TCTTCAACCAGCGGCCCGGGCAGCTTTTG‑GGTTAAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCt                                                                       <  2:769520/140‑1 (MQ=255)
                                                                  aaaacccagccagACCCGTGAGGAGGGAAAT‑TTTTCAAACAGGGGCCGGGGCAG‑GTTTCGGGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGa                                                                     <  2:963089/135‑1 (MQ=255)
                                                                   aTACCCAGCCAGATCCCTGAGGCGGGAAAT‑TCTTCTAACGGCGGACGGTGCGGCTTTTC‑GGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGAt                                                                    <  2:544947/140‑1 (MQ=255)
                                                                   aTACCCACCCAGATCCCGGAGGCAGGTAAA‑TCTTCAAACAGGGGCCCGGGCGGCTTTTG‑GGTGGAAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGAt                                                                    <  2:170287/140‑1 (MQ=255)
                                                                   aTAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGAt                                                                    >  1:206741/1‑140 (MQ=255)
                                                                   aTAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGAt                                                                    >  1:1271628/1‑140 (MQ=255)
                                                                   aTAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGAt                                                                    >  1:747968/1‑140 (MQ=255)
                                                                   aTAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGAt                                                                    >  2:1195771/1‑140 (MQ=255)
                                                                     aaCCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATaa                                                                  >  2:1093217/1‑140 (MQ=255)
                                                                          gccagATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTg                                                             >  2:597016/1‑140 (MQ=255)
                                                                            cagACCCTTGGGGCAGTAAAT‑TTTTCAAACAGGGGCCGGTGCGGTTTTTG‑GGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGat                                                           <  2:1473945/140‑1 (MQ=255)
                                                                              gaccccTGAGGCAGGTAAA‑TCTTCAAACAGCGGCCCGTGCAGCTTTTC‑GGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGatat                                                         <  1:592580/137‑1 (MQ=255)
                                                                               aTCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATc                                                        <  1:539896/140‑1 (MQ=255)
                                                                               aTCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATc                                                        >  1:582810/1‑140 (MQ=255)
                                                                                    tGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCa                                                   >  2:1727187/1‑140 (MQ=255)
                                                                                     gcggCGGGAAAT‑TCTTCTACCGGGGGCCGGTGCGGC‑TTTT‑GGGGGTAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCAt                                                  <  2:1570344/138‑1 (MQ=255)
                                                                                      gggaaGGTAAT‑TCTTCAACCAGGGGCCGGTGGGGGTTTTG‑GGTGGTAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATa                                                 <  2:1687222/136‑1 (MQ=255)
                                                                                        gCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATaaa                                               >  2:556767/1‑140 (MQ=255)
                                                                                           ggTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCg                                            >  1:444643/1‑140 (MQ=255)
                                                                                           ggTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCg                                            >  1:1018472/1‑140 (MQ=255)
                                                                                           ggTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCg                                            >  2:1199254/1‑140 (MQ=255)
                                                                                           ggTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCg                                            >  2:908603/1‑140 (MQ=255)
                                                                                           ggTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGAGATATCTGCCATAAACCg                                            >  1:1822143/1‑140 (MQ=255)
                                                                                            gaaaa‑TCTTCAAACGGCGGCCCGTGC‑GCGTTTT‑GGGTGTAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           <  2:1855710/138‑1 (MQ=255)
                                                                                            gaaaa‑TCTTCAAACGGCGGCCCGGGCGGCTTTTC‑GGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           <  2:1545509/138‑1 (MQ=255)
                                                                                            gTAAATTCTTCAAACAGCGGCCGGTGCGGCTTTTG‑GGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCg                                            <  2:1894406/140‑1 (MQ=255)
                                                                                            gTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           >  1:1493379/1‑140 (MQ=255)
                                                                                            gTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           >  1:361681/1‑140 (MQ=255)
                                                                                            gTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGCGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           >  1:247122/1‑140 (MQ=255)
                                                                                            aaaaa‑TCTTCAACCGGGGGCCGGTGCACCTTTTC‑GGGGTTAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           <  2:1891295/138‑1 (MQ=255)
                                                                                              aaa‑TCTTCTAATAGCGGACCGTGCGGGGTTGC‑GGTGGTAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCa                                         <  1:180574/140‑1 (MQ=255)
                                                                                              aaa‑TCTTCTAACAGCGGCCCGTGCAGCTTTTC‑GGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCa                                         <  2:495989/140‑1 (MQ=255)
                                                                                              aaa‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCa                                         <  1:1084293/140‑1 (MQ=255)
                                                                                               aattcttcaACCAGCGGCCGGGGCGGTTTTTG‑GGGGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCa                                         <  2:1271628/137‑1 (MQ=255)
                                                                                                     tctAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTtta                                   >  1:799179/1‑140 (MQ=255)
                                                                                                       tAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTttatt                                 >  2:373187/1‑140 (MQ=255)
                                                                                                           aggggACCGTGCAGCTTTTC‑GGTGGTAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAaga                             <  1:599257/137‑1 (MQ=255)
                                                                                                            gCGGACCGTGCGGCGTTTC‑GGTGGTAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAagag                            <  1:1515705/140‑1 (MQ=255)
                                                                                                            gCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAagag                            >  1:719884/1‑140 (MQ=255)
                                                                                                             cGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGt                           >  1:643470/1‑140 (MQ=255)
                                                                                                             cGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGt                           >  1:1478146/1‑140 (MQ=255)
                                                                                                              ggACCGTGCAGCTTTTC‑GGGGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTg                          <  2:1018472/140‑1 (MQ=255)
                                                                                                               gACCGTGCAGCGTTTC‑GGTGGTAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAaga                             <  1:1612655/136‑1 (MQ=255)
                                                                                                               gACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAaga                             >  2:1612655/1‑136 (MQ=255)
                                                                                                               gACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTgg                         >  2:525679/1‑140 (MQ=255)
                                                                                                                aCCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGc                        >  1:1493855/1‑140 (MQ=255)
                                                                                                                aCCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGc                        >  2:1270462/1‑140 (MQ=255)
                                                                                                                   gTGCGGCTTTTG‑GGGGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTa                     <  2:558664/140‑1 (MQ=255)
                                                                                                                    tgtaGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTAt                    >  1:1044676/4‑140 (MQ=255)
                                                                                                                              c‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCtgt          >  1:959985/1‑140 (MQ=255)
                                                                                                                              c‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCtgt          >  2:922874/1‑140 (MQ=255)
                                                                                                                                ggtggaAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCtgtg         <  2:643470/140‑1 (MQ=255)
                                                                                                                                 gggaaaaac‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGa        <  2:1606602/135‑1 (MQ=255)
                                                                                                                                  tggaAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGaa       <  1:61439/140‑1 (MQ=255)
                                                                                                                                  tggaAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGaa       <  2:111656/140‑1 (MQ=255)
                                                                                                                                       aaa‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGt  <  1:885254/140‑1 (MQ=255)
                                                                                                                                       aaa‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGt  <  1:525679/140‑1 (MQ=255)
                                                                                                                                       aaa‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGt  <  1:574945/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                          
TTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTC‑GGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGT  >  NC_000913/3926231‑3926503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑