| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 411076 = | NA (NA) | 16 (0.300) | 12/274 | 2.5 | NA | intergenic (+24/+221) | mak/araJ | manno(fructo)kinase/putative transport protein AraJ |
| ? | NC_000913 | = 4296058 | NA (NA) | intergenic (+264/+378) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO | |||||
GATTAAACAATTTGTCTTCGGCGGCGAATGTGAAACGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCC > NC_000913/410944‑411213 | gATTAAACAATTTGTCTTCGGCGGCGAATGTGAAACGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGa > 2:693509/1‑140 (MQ=255)gATTAAACAATTTGTCTTCGGCGGCGAATGTGAAACGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGa > 2:541885/1‑140 (MQ=255) gccgcatccgacaccaacgcctgatgcgacgcttaacgcgtcttatcaggcctacgccagacagcgcaatagcctgatttagcgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGc > 2:507955‑M1/130‑140 (MQ=255) aaCAATTTGTCTTCGGCGGCGAATGTGAAACGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGa < 2:655277/140‑1 (MQ=255) aaTTTGTCTTCGGCGGCGAATGTGAAACGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGc > 2:317018/1‑140 (MQ=255) tccgacatcaacgcctgatgcgacgcttaacgcgtcttatcaggcctacgccagacagcgcaatagcctgatttagcgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGCGACGCt < 2:828894‑M1/17‑1 (MQ=255) aTTTGTCTTCGGCGGCGAATGTGAAACGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACg > 2:781427/1‑138 (MQ=255) aTTTGTCTTCGGCGGCGAATGTGAAACGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACg < 1:781427/138‑1 (MQ=255) aTTTGTCTTCGGCGGCGAATGTGAAACGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCt < 2:259383/140‑1 (MQ=255) ttGTCTTCGGCTGCGAATGTGAAACGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTg > 2:258609/1‑140 (MQ=255) gacatcaacgcctgatgcgacgcttaacgcgtcttatcaggcctacgccagacagcgcaatagcctgatttagcgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGCGACGCTTGc > 1:131256‑M1/121‑140 (MQ=255) caacgcctgatgcgacgcttaacgcgtcttatcaggcctacgccagacagcgcaatagcctgatttagcgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGCGACGCTTGCCGCGt > 1:440784‑M1/116‑140 (MQ=255) caacgcctgatgcgacgcttaacgcgtcttatcaggcctacgccagacagcgcaatagcctgatttagcgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGCGACGCTTGCCGCGt > 1:912303‑M1/116‑140 (MQ=255) acgcctgatgcgacgcttaacgcgtcttatcaggcctacgccagacagcgcaatagcctgatttagcgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGCGACGCTTGCCGCGTCt < 2:715009‑M1/27‑1 (MQ=255) cggcgAATGTGAAACGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTa > 2:475509/1‑140 (MQ=255) cctgatgcgacgcttaacgcgtcttatcaggcctacgccagacagcgcaatagcctgatttagcgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGCGACGCTTGCCGCGTCTTAt > 1:715009‑M1/111‑140 (MQ=255) cctgatgcgacgcttaacgcgtcttatcaggcctacgccagacagcgcaatagcctgatttagcgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGCGACGCTTGCCGCGTCTTAt > 1:807120‑M1/111‑140 (MQ=255) tgatgcgacgcttaacgcgtcttatcaggcctacgccagacagcgcaatagcctgatttagcgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGCGACGCTTGCCGCGTCTTATCa > 2:310100‑M1/109‑140 (MQ=255) cgAATGTGAAACGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAGAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCa < 2:389164/140‑1 (MQ=255) atgcgacgcttaacgcgtcttatcaggcctacgccagacagcgcaatagcctgatttagcgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg < 1:529774‑M1/34‑1 (MQ=255) aaTGTGAAACGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg < 2:16747/140‑1 (MQ=255) tgcgacgcttaacgcgtcttatcaggcctacgccagacagcgcaatagcctgatttagcgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc > 2:208511‑M1/106‑140 (MQ=255) tgcgacgcttaacgcgtcttatcaggcctacgccagacagcgcaatagcctgatttagcgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc > 2:853288‑M1/106‑140 (MQ=255) tgcgacgcttaacgcgtcttatcaggcctacgccagacagcgcaatagcctgatttagcgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc > 1:790325‑M1/106‑140 (MQ=255) acgcttaacgcgtcttatcaggcctacgccagacagcgcaatagcctgatttagcgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCtat < 1:10239‑M1/39‑2 (MQ=255) cGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACaaaa < 1:374265/140‑1 (MQ=255) cGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACaaaa < 1:353084/140‑1 (MQ=255) cGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAg < 1:517774/140‑1 (MQ=255) ggCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCg < 1:219726/140‑1 (MQ=255) cGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTa < 1:39386/140‑1 (MQ=255) gAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAg < 2:120842/140‑1 (MQ=255) aGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGc > 2:280202/1‑140 (MQ=255) aGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGc < 2:684274/140‑1 (MQ=255) gTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATa > 1:560093/1‑140 (MQ=255) cgcaatagcctgatttagcgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTc < 1:486057‑M1/75‑1 (MQ=255) ggcgTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCAcg < 1:394544/140‑1 (MQ=255) cgcgGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCAt < 1:280202/140‑1 (MQ=255) gcTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa > 1:456938/1‑140 (MQ=255) gcTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTAGCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa > 2:228170/1‑140 (MQ=255) tGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAt < 1:541885/140‑1 (MQ=255) gattttgtaggtcggataaggcgtttacgccgcatccgacatcaATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGt > 2:486057‑M1/45‑140 (MQ=255) ttATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCt > 1:764826/1‑140 (MQ=255) tGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCGGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCg < 1:228170/140‑1 (MQ=255) cacaAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGc > 1:230644/1‑140 (MQ=255) aaGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTg > 2:527894/1‑140 (MQ=255) aaGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTg > 2:785272/1‑140 (MQ=255) aaGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTg > 1:623527/1‑140 (MQ=255) aaGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTg > 2:132110/1‑140 (MQ=255) gCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCcgcg > 2:278990/1‑140 (MQ=255) cAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGt < 2:456938/140‑1 (MQ=255) tGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTa > 1:475894/1‑140 (MQ=255) tcatGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 2:589327/1‑140 (MQ=255) | GATTAAACAATTTGTCTTCGGCGGCGAATGTGAAACGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCC > NC_000913/410944‑411213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |