Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 3,464,116 | C→A | S65S (TCC→TCA) | gspL → | Type II secretion system protein GspL |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,464,116 | 0 | C | A | 96.2% | 170.9 / 0.4 | 52 | S65S (TCC→TCA) | gspL | Type II secretion system protein GspL |
Reads supporting (aligned to +/- strand): ref base C (1/1); new base A (20/30); total (21/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.71e-01 |
TGGATGACGTTCTCCGCAGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCCCTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACACCCAGGACTGGCACTGGACGGTTGTCGATAAACAAAACGAAAGTGTCGAGGT > NC_000913/3463979‑3464247 | tGGATGACGTTCTCCGCAGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACt > 1:152649/1‑140 (MQ=255) ggATGACGTTCTCCGCAGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTc > 2:703350/1‑140 (MQ=255) ggATGACGTTCTCCGCAGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTc > 1:876695/1‑140 (MQ=255) ggATGACGTTCTCCGCAGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTc > 1:608138/1‑140 (MQ=255) gATGACGTTCTCCGCAGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCa > 1:35761/1‑140 (MQ=255) tGACGTTCTCCGCAGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACg > 2:9539/1‑140 (MQ=255) gACGTTCTCCGCAGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGc < 1:34854/140‑1 (MQ=255) cGTTCTCCGCAGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTg > 2:533798/1‑140 (MQ=255) tctcCGCAGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGccc < 1:649441/140‑1 (MQ=255) ctcCGCAGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCa < 1:141941/140‑1 (MQ=255) gCAGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGc < 2:599122/140‑1 (MQ=255) aGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCa < 1:489550/140‑1 (MQ=255) aGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCa < 1:281710/140‑1 (MQ=255) aGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCa < 1:9539/140‑1 (MQ=255) gATAGCGTATCTTCGGCACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTCTTATATCGTTCACTCACGCTGCCCAACGCCaa > 2:426990/1‑140 (MQ=255) gTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCCCTCACGCTGCCCAACGCCAAATACaa > 1:204354/1‑140 (MQ=255) tCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCAc < 1:559439/140‑1 (MQ=255) gTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGc > 1:290805/1‑140 (MQ=255) gTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGc < 2:24009/140‑1 (MQ=255) gTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGc > 2:485062/1‑140 (MQ=255) cATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGcaca < 1:814316/140‑1 (MQ=255) cATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGcaca < 1:634172/140‑1 (MQ=255) aTACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACaa > 2:440559/1‑140 (MQ=255) tACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACaaa < 1:169043/140‑1 (MQ=255) cGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACa < 2:166799/140‑1 (MQ=255) tCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCCCCGCACAAACATTa > 2:570032/1‑140 (MQ=255) cACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTAc > 2:63368/1‑140 (MQ=255) cACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTAc > 2:169232/1‑140 (MQ=255) aCGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACa < 2:290805/140‑1 (MQ=255) cGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACaa > 1:116260/1‑140 (MQ=255) aCGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAAtgg < 1:95894/140‑1 (MQ=255) tCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAAtggctgg < 2:152649/140‑1 (MQ=255) tCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAAtggctgg < 1:440559/140‑1 (MQ=255) tCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAAtggctgg < 2:591253/140‑1 (MQ=255) tGGAGTCGCTGGCCGATCGGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAgaggag > 2:651135/1‑140 (MQ=255) gAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGAc > 2:855508/1‑140 (MQ=255) gCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGa < 2:555439/140‑1 (MQ=255) cGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGaca < 1:703350/140‑1 (MQ=255) gATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGacaa < 1:169232/140‑1 (MQ=255) gCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCCCTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACAccc < 2:204354/140‑1 (MQ=255) gTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACACCCAGGAc < 2:876695/140‑1 (MQ=255) gTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACACCCAGGAc < 1:485062/140‑1 (MQ=255) tGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACACCCAGGACt > 2:651334/1‑140 (MQ=255) ccGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACACCCAGGACTgg < 2:33036/140‑1 (MQ=255) cGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACACCCAGGACTGGc > 2:409552/1‑140 (MQ=255) gAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACACCCAGGACTGGCa < 1:14576/139‑1 (MQ=255) gAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACACCCAGGACTGGCa > 2:14576/1‑139 (MQ=255) tGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACACCCAGGACTGGCACTGGa < 2:608138/140‑1 (MQ=255) tGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACACCCAGGACTGGCACTGGa < 1:855508/140‑1 (MQ=255) cATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCTCAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACACCCAGGACTGGCACTGGACGGt < 2:116260/140‑1 (MQ=255) gATCCCACCAGAGGGCCTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACACCCAGGACTGGCACTGGACGGTTGTCGATa < 1:694048/140‑1 (MQ=255) cTTTTATATCGTTCACTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACACCCAGGACTGGCACTGGACGGTTGTCGATAAACAAAACGAAAgtgt > 2:514105/1‑140 (MQ=255) tatCGTTCACTCACGCTGCCCAACGCCGAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACACCCAGGACTGGCACTGGACGGTTGTCGATAAACAAAACGAAAGTGTCGAGGt < 2:248618/140‑1 (MQ=255) | TGGATGACGTTCTCCGCAGATAGCGTATCTTCGGTACATACGCTCACGGACGATCTTCCGCTGGAGTCGCTGGCCGATCAGCCCGGTGCCGGAAATGTTCATCTTTTGATCCCACCAGAGGGCCTTTTATATCGTTCCCTCACGCTGCCCAACGCCAAATACAAACTCACCGCACAAACATTACAATGGCTGGCAGAGGAGACGTTACCCGACAACACCCAGGACTGGCACTGGACGGTTGTCGATAAACAAAACGAAAGTGTCGAGGT > NC_000913/3463979‑3464247 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |