BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,296,060	0	C	T	25.2%	198.4 / 66.4	103	intergenic (+266/+376)	gltP/yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
Reads supporting (aligned to +/- strand): ref base C (36/41); new base T (13/13); total (49/54)
Fisher's exact test for biased strand distribution p-value = 8.23e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.41e-02
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 104 total aligned reads displayed.

CGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTC  >  NC_000913/4295923‑4296197

cGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑Gc                                                                                                                                         >  2:1423901/1‑140 (MQ=17)

   ttATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCACATCCGACATCA‑‑‑‑‑‑AT‑GCCTg                                                                                                                                      >  2:673430/1‑140 (MQ=17)

    tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGa                                                                                                                                     >  2:220790/1‑140 (MQ=17)

    tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGa                                                                                                                                     >  1:1865247/1‑140 (MQ=32)

    tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCATGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGa                                                                                                                                     >  1:418331/1‑140 (MQ=17)

         cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGa                                                                                                                                <  1:559617/140‑1 (MQ=17)

         cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGa                                                                                                                                >  2:11077/1‑140 (MQ=17)

           cATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACg                                                                                                                              <  2:271720/140‑1 (MQ=17)

                gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGc                                                                                                                         >  2:1251261/1‑140 (MQ=18)

                gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGc                                                                                                                         <  2:319081/140‑1 (MQ=33)

                   aTCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCcgc                                                                                                                      <  2:1262526/140‑1 (MQ=37)

                   aTCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCcgc                                                                                                                      <  2:117072/140‑1 (MQ=37)

                     cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGt                                                                                                                    >  2:1224208/1‑140 (MQ=25)

                     cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGt                                                                                                                    >  1:561714/1‑140 (MQ=37)

                      aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTc                                                                                                                   >  2:1118308/1‑140 (MQ=25)

                       aCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTCt                                                                                                                  >  1:553168/1‑140 (MQ=25)

                        cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTCtt                                                                                                                 >  1:1734147/1‑140 (MQ=25)

                        cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCtt                                                                                                                 >  1:271848/1‑140 (MQ=37)

                        cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCtt                                                                                                                 >  1:345618/1‑140 (MQ=37)

                        cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCtt                                                                                                                 >  1:1775983/1‑140 (MQ=37)

                        cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACACCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTCtt                                                                                                                 >  2:1875327/1‑140 (MQ=25)

                          ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTCTTAt                                                                                                               <  1:1652839/140‑1 (MQ=25)

                          ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTCTTAt                                                                                                               <  1:1372323/140‑1 (MQ=25)

                           cTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                              >  1:497046/1‑140 (MQ=37)

                           cTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                              <  2:318232/140‑1 (MQ=39)

                           cTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                              <  1:356578/140‑1 (MQ=39)

                           cTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                              <  2:1944159/140‑1 (MQ=37)

                            tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                                                             >  1:743212/1‑140 (MQ=25)

                            tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                                                             >  2:1795673/1‑140 (MQ=25)

                             gATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                                                            >  2:238214/1‑140 (MQ=37)

                              aTGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGt                                                                                                                    >  2:1674188/1‑131 (MQ=25)

                              aTGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGt                                                                                                                    <  1:1674188/131‑1 (MQ=21)

                              aTGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                                                           <  1:46460/140‑1 (MQ=25)

                               tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                          <  2:1139223/140‑1 (MQ=25)

                               tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                          <  1:14717/140‑1 (MQ=25)

                               tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                          <  2:1977931/140‑1 (MQ=25)

                               tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                          <  1:1795673/140‑1 (MQ=25)

                               tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                          <  2:518959/140‑1 (MQ=25)

                               tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                          <  1:238214/140‑1 (MQ=39)

                               tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                          <  2:1865247/140‑1 (MQ=39)

                                gCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                                                         <  1:1598348/140‑1 (MQ=25)

                                gCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                                                         <  2:743212/140‑1 (MQ=25)

                                   aCGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc                                                                                                      >  1:967144/1‑140 (MQ=37)

                                    cGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACg                                                                                                     <  1:1010332/140‑1 (MQ=38)

                                      cTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGcc                                                                                                   <  1:1067503/140‑1 (MQ=39)

                                       ttAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCa                                                                                                  <  1:2058412/140‑1 (MQ=39)

                                         aaCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa                                                                                                <  2:202726/140‑1 (MQ=37)

                                          aCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGAc                                                                                               >  2:900590/1‑140 (MQ=37)

                                               tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcgc                                                                                          >  2:659348/1‑140 (MQ=37)

                                               tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcgc                                                                                          >  2:36028/1‑140 (MQ=37)

                                                cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCa                                                                                         >  2:1297412/1‑140 (MQ=37)

                                                 ttATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCaa                                                                                        <  1:1639801/140‑1 (MQ=38)

                                                          cTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAt                                                                               >  2:1383906/1‑140 (MQ=37)

                                                            aCGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAttt                                                                             >  1:1758920/1‑140 (MQ=37)

                                                             cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTa                                                                            >  2:2005852/1‑140 (MQ=37)

                                                             cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTa                                                                            >  1:1926435/1‑140 (MQ=37)

                                                                  gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg                                                                       <  1:659348/140‑1 (MQ=37)

                                                                  gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg                                                                       <  1:1276111/140‑1 (MQ=37)

                                                                  gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg                                                                       <  2:1758920/140‑1 (MQ=37)

                                                                  gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg                                                                       <  1:36028/140‑1 (MQ=37)

                                                                   aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCg                                                                         <  1:1318227/137‑1 (MQ=37)

                                                                   aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGa                                                                      >  2:727113/1‑140 (MQ=37)

                                                                   aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGa                                                                      <  1:1871472/140‑1 (MQ=37)

                                                                   aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGa                                                                      >  2:1800987/1‑140 (MQ=37)

                                                                       cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt                                                                  <  2:967144/140‑1 (MQ=37)

                                                                       cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt                                                                  >  1:1139223/1‑140 (MQ=37)

                                                                       cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt                                                                  >  1:1312721/1‑140 (MQ=37)

                                                                       cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt                                                                  >  2:1079195/1‑140 (MQ=37)

                                                                       cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt                                                                  >  2:1652839/1‑140 (MQ=37)

                                                                       cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt                                                                  >  1:2015755/1‑140 (MQ=37)

                                                                          aaTAGCATGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTa                                                               <  2:418331/140‑1 (MQ=37)

                                                                            tAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAgg                                                             <  1:378762/140‑1 (MQ=37)

                                                                             aGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGt                                                            <  1:1422560/140‑1 (MQ=37)

                                                                             aGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGt                                                            <  2:345618/140‑1 (MQ=37)

                                                                                 tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGa                                                        >  1:811561/1‑140 (MQ=38)

                                                                                  gATTTAGCGTGATTTTGTAGGTCTGGTAGGGCGTGTACGCAGGAGTCGCCATCA‑‑‑‑‑‑TG‑GCATGATGGGACTTTTGAGACGTCTTATTAGGGATACCGGAGATAGCGCAATAGGATGATTTAGCGAGATTTTGTAGGtaaggt                                                       <  2:1744848/140‑6 (MQ=2)

                                                                                  gATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAt                                                       <  2:1312721/140‑1 (MQ=37)

                                                                                         cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGt                                                >  1:559093/1‑140 (MQ=38)

                                                                                           accctccgTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATaa                                                     <  1:1096452/133‑1 (MQ=11)

                                                                                             aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAt                                            >  1:1907031/1‑140 (MQ=38)

                                                                                              ttttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATg                                           >  1:1531702/1‑140 (MQ=38)

                                                                                                 tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCg                                        <  2:1926435/140‑1 (MQ=37)

                                                                                                   tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCa                                      <  2:559093/140‑1 (MQ=37)

                                                                                                   tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCa                                      <  2:1531702/140‑1 (MQ=37)

                                                                                                       tCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCg                                  <  2:1097622/140‑1 (MQ=37)

                                                                                                       tCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCg                                  <  2:1342067/140‑1 (MQ=37)

                                                                                                            tAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATc                             <  2:497046/140‑1 (MQ=37)

                                                                                                              aGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCaa                           <  1:1079195/140‑1 (MQ=37)

                                                                                                               ggCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAAc                          >  1:1097622/1‑140 (MQ=37)

                                                                                                                  gTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGcc                       <  1:1383906/140‑1 (MQ=37)

                                                                                                                    ttACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTg                     >  1:1327850/1‑140 (MQ=37)

                                                                                                                     tACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGa                    >  2:1985091/1‑140 (MQ=37)

                                                                                                                     tACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGa                    >  2:119201/1‑140 (MQ=37)

                                                                                                                        gccgcATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGc                 <  1:1800987/140‑1 (MQ=34)

                                                                                                                          cgcATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGa               <  1:727113/140‑1 (MQ=34)

                                                                                                                            cATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACg             <  2:1807197/140‑1 (MQ=34)

                                                                                                                              tCCGACATCA‑‑‑‑‑‑AC‑GCCTGATTCGACGCTTGCCGCGTCTTa                                                                                                                >  1:187506/1‑39 (MQ=14)

                                                                                                                              tCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCt           >  2:1523524/1‑140 (MQ=34)

                                                                                                                                 gACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTaa        <  1:1843880/140‑1 (MQ=34)

                                                                                                                                       a‑‑‑‑‑‑aC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTc  >  1:1194399/1‑140 (MQ=32)

CGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCA‑‑‑‑‑‑AC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTC  >  NC_000913/4295923‑4296197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`