New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 377353 =NA (NA)13 (0.100)
+TTAGCGTCGCATCAGGCATCTGCGCACGAC
5/216 7.9 NA noncoding (18/37 nt) other REP32a
?NC_000913 4325850 = NA (NA)intergenic (‑109/+549) yjdN/yjdM conserved protein YjdN/conserved protein YjdM
Rejected: Coverage evenness skew score above cutoff.

GTAAGCCGTAGGCCTGATAAGACGCGCAAAGCGTCGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAA‑‑CGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/377478‑377353
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA  >  NC_000913/4325850‑4325916
                                                                                                                                ||||||||||||||||||||||||||||||                                                                   
GTAAGCCGTAGGCCTGATAAGACGCGCAAAGCGTCGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAA‑‑CGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGTTAGCGTCGCATCA                                                                                     >  1:1108540/1‑140
                         GCAAAGCGTCGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAA‑‑CGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATG                                                            <  2:1108540/140‑1
                                 TCGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGT                                                      >  2:2457549/1‑140
                                 TCGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAA‑‑CGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTga                                                    >  2:749565/1‑138
                                 TCGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAA‑‑CGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGataaac                                                    >  2:1529537/1‑134
                                  CGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTg                                                     <  1:2457549/140‑2
                                                    CGACTGCCGGATGCGGCGTGAA‑‑CGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACG                                 >  1:465887/1‑140
                                                    CGACTGCCGGATGCGGCGTGAA‑‑CGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACG                                 >  2:2280208/1‑140
                                                     GACTGCCGGATGCGGCGTGAA‑‑CGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCG‑‑ATAAACGTCTTGTCCGGCCTACattt                              <  1:1529537/140‑5
                                                           CGGATGCGGCGTGAA‑‑CGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGgtggcg                          <  2:465887/140‑7
                                                                                         CTACACTTCGCCCGTAAGCCGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGA  <  1:1240221/136‑1
                                                                                         CTACACTTCGCCCGTAAGCCGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGA  >  2:1240221/1‑136
                                                                                                     CATAAACCGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGA  <  1:1321115/124‑1
                                                                                                     CATAAACCGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGA  >  2:1321115/1‑124
                                                                                                                                ||||||||||||||||||||||||||||||                                                                   
GTAAGCCGTAGGCCTGATAAGACGCGCAAAGCGTCGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAA‑‑CGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/377478‑377353
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA  >  NC_000913/4325850‑4325916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.