Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 186,628 G→T H675N (CAT→AAT)  glnD ← PII uridylyltransferase/uridylyl removing enzyme

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913186,6280GT100.0% 208.9 / NA 60H675N (CAT→AAT) glnDPII uridylyltransferase/uridylyl removing enzyme
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (32/28);  total (32/28)

GGGCGGTCCGGGCTCCAGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATGGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAACCCGTTCGCGCATATCCGGCGTGTTTTG  >  NC_000913/186498‑186763
                                                                                                                                  |                                                                                                                                       
gggCGGTCCGGGCTCCAGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACaaa                                                                                                                                <  2:1076005/140‑1 (MQ=255)
 ggCGGTCCGGGCTCCAGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACaaaa                                                                                                                               >  1:262754/1‑140 (MQ=255)
 ggCGGTCCGGGCTCCAGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACaaaa                                                                                                                               >  1:216868/1‑140 (MQ=255)
 ggCGGTCCGGGCTCCAGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACaaaa                                                                                                                               <  1:133191/140‑1 (MQ=255)
   cGGTCCGGGCTCCAGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATa                                                                                                                             <  2:1420421/140‑1 (MQ=255)
    ggTCCGGGCTCCAGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAg                                                                                                                            >  2:48087/1‑140 (MQ=255)
     gTCCGGGCTCCAGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGt                                                                                                                           >  1:1298803/1‑140 (MQ=255)
     gTCCGGGCTCCAGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGt                                                                                                                           <  2:1298803/140‑1 (MQ=255)
      tCCGGGCTCCAGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCgg                                                                                                                                     <  2:1171870/129‑1 (MQ=255)
      tCCGGGCTCCAGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCgg                                                                                                                                     >  1:1171870/1‑129 (MQ=255)
      tCCGGGCTCCAGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGtt                                                                                                                          >  1:1376218/1‑140 (MQ=255)
           gCTCCAGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCAc                                                                                                                     >  1:1393853/1‑140 (MQ=255)
                aGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACaaa                                                                                                                                <  1:1347075/124‑1 (MQ=255)
                aGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACaaa                                                                                                                                >  2:1347075/1‑124 (MQ=255)
                aGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCAc                                                                                                                     <  2:605837/135‑1 (MQ=255)
                aGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCAc                                                                                                                     >  1:605837/1‑135 (MQ=255)
                  aTAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGTGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCg                                                                                                              <  1:1415709/140‑1 (MQ=255)
                  aTAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCg                                                                                                              <  2:1185922/140‑1 (MQ=255)
                                         cgTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCct                                                                                       <  1:1016803/140‑1 (MQ=255)
                                           tAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCctct                                                                                     >  1:1059154/1‑140 (MQ=255)
                                            aGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCtt                                                                                    >  1:1290842/1‑140 (MQ=255)
                                              ccTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTtcg                                                                                  >  2:1405477/1‑140 (MQ=255)
                                               cTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTtcgt                                                                                 <  2:1393853/140‑1 (MQ=255)
                                               cTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTtcgt                                                                                 <  2:31707/140‑1 (MQ=255)
                                               cTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCAGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTtcgt                                                                                 <  2:440955/140‑1 (MQ=255)
                                                  cGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGa                                                                              >  1:463744/1‑140 (MQ=255)
                                                         aGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAATTTGGTGCAGCGCCTCTTCGTCGATGTTATcc                                                                      >  1:1243106/1‑140 (MQ=255)
                                                             aTACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATg                                                                   <  1:139272/140‑1 (MQ=255)
                                                              tACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATgc                                                                  <  2:1331624/140‑1 (MQ=255)
                                                                  aGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCag                                                              <  2:463744/140‑1 (MQ=255)
                                                                   gCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCagt                                                             >  2:152491/1‑140 (MQ=255)
                                                                        ttGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATgcgc                                                                <  1:495796/132‑1 (MQ=255)
                                                                        ttGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATgcgc                                                                >  2:495796/1‑132 (MQ=255)
                                                                         tGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTagtgcc                                                       <  1:48087/140‑1 (MQ=255)
                                                                          gCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTagtgcca                                                      <  1:1405477/140‑1 (MQ=255)
                                                                          gCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTagtgcca                                                      <  2:1376218/140‑1 (MQ=255)
                                                                               aaTCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTagtgccagtgcc                                                 <  2:262754/140‑1 (MQ=255)
                                                                                 tCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTg                                               <  2:1290842/140‑1 (MQ=255)
                                                                                    tGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAg                                            <  1:874422/140‑1 (MQ=255)
                                                                                     gCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTagtgccagtgcc                                                 >  2:579266/1‑134 (MQ=255)
                                                                                     gCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTagtgccagtgcc                                                 <  1:579266/134‑1 (MQ=255)
                                                                                          aataaATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTg                                      >  2:183684/1‑140 (MQ=255)
                                                                                                   cGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAAc                             >  2:752919/1‑140 (MQ=255)
                                                                                                   cGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAAc                             >  2:151873/1‑140 (MQ=255)
                                                                                                   cGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAAc                             >  1:379699/1‑140 (MQ=255)
                                                                                                   cGGGCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCTGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAAcc                            >  2:321340/1‑140 (MQ=255)
                                                                                                   cGGGCATGCCAGGCCAGTTGATTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAAcc                            >  2:590223/1‑140 (MQ=255)
                                                                                                     ggCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAAccc                           >  2:369372/1‑140 (MQ=255)
                                                                                                      gCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAACCCg                          <  1:152491/140‑1 (MQ=255)
                                                                                                      gCATGCCAGGCCAGTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAACCCg                          >  1:529463/1‑140 (MQ=255)
                                                                                                            caggccagTTGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAACCCGTTcgcg                    <  1:24309/140‑1 (MQ=255)
                                                                                                                    ttGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAACCCGTTCGCGCa                  >  1:1209224/1‑134 (MQ=255)
                                                                                                                    ttGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAACCCGTTCGCGCa                  <  2:1209224/134‑1 (MQ=255)
                                                                                                                    ttGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAACCCGTTCGCGCATATCCg            <  2:379699/140‑1 (MQ=255)
                                                                                                                    ttGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAACCCGTTCGCGCATATCCg            >  1:982104/1‑140 (MQ=255)
                                                                                                                    ttGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAACCCGTTCGCGCATATCCg            >  2:1134340/1‑140 (MQ=255)
                                                                                                                    ttGATTTGGGCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAACCCGTTCGCGCATATCCg            >  2:650600/1‑140 (MQ=255)
                                                                                                                             gCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAACCCGTTCGCGCATATCCGGCGTGtttt   >  1:284985/1‑140 (MQ=255)
                                                                                                                             gCTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAACCCGTTCGCGCATATCCGGCGTGtttt   >  2:532185/1‑140 (MQ=255)
                                                                                                                              cTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAACCCGTTCGCGCATATCCGGCGTGTTTTg  >  1:544134/1‑140 (MQ=255)
                                                                                                                              cTATTGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAACCCGTTCGCGCATATCCGGCGTGTTTTg  >  2:1310926/1‑140 (MQ=255)
                                                                                                                                  |                                                                                                                                       
GGGCGGTCCGGGCTCCAGATAAAAATCTCGGTGCCTCCACGCGTAGCCTGCGGGCTAAGCAATACCAGCGGTTTGCTTAAATCATGCTGTAATAAATGGCGGGCATGCCAGGCCAGTTGATTTGGGCTATGGCGGACAAAATAGTTAGCACGACAGCGTGACCAAATTTGGTGCAGCGCCTCTTCGTCGATGTTATCCATGCGCAGTAGTGCCAGTGCCTGGAGTTGGTGATGGCGAACCCGTTCGCGCATATCCGGCGTGTTTTG  >  NC_000913/186498‑186763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: