BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,287,230	A→G	noncoding (7/171 nt)	rttR ←	small RNA RttR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,287,230	0	A	G	100.0%	56.1 / NA	16	noncoding (7/171 nt)	rttR	small RNA RttR
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (14/2); total (14/2)

CCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCG‑TTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTAATGCTTGAGATGG  >  NC_000913/1287157‑1287365

ccTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCG‑TTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgtt                                                                       <  2:1298766‑M1/140‑35 (MQ=255)

          aGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCG‑TTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggca                                                             >  1:103990‑M1/1‑96 (MQ=255)

          aGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCG‑TTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggca                                                             <  1:965521‑M1/140‑45 (MQ=255)

                      ttCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAA‑TTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgc                                                 >  1:590393‑M1/1‑84 (MQ=255)

                       tCCCCGCTTGGGCAGAATATTTGATTGCGGATTCG‑TTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggcggttgcctgtggcaacgttctctcgct                                                >  2:248102‑M1/1‑83 (MQ=255)

                       tCCCCGCTTGGGCAGAATATTTGATTGCGGATTCG‑TTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgct                                                >  2:313256‑M1/1‑83 (MQ=255)

                       tCCCCGCTTGGGCAGAATATTTGATTGCGGATTCG‑TTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgct                                                >  2:1225035‑M1/1‑83 (MQ=255)

                          ccGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAA‑TTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgctttc                                             >  2:971435‑M1/1‑80 (MQ=255)

                              ttgGGCAGAATATTTGATTGCGGATTCGTTTGAGAA‑TTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggtcgttgcctgtggcaacgttctctcgctttcgctc                                         >  2:1255142‑M1/2‑76 (MQ=255)

                              ttgGGCAGAATATTTGATTGCGGATTCGTTTGAGAA‑TTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgctttcgctc                                         >  1:604207‑M1/2‑76 (MQ=255)

                                      aaTATTTGATTGCGGATTCGTTTGAGAA‑TTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgctttcgctcgaatcgaa                                 >  1:703340‑M1/1‑68 (MQ=255)

                                                tGCGGATTCGTTTGAGAA‑TTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgctttcgctcgaatcgaaccttagtcga                       >  2:1169701‑M1/1‑58 (MQ=255)

                                                tGCGGATTCGTTTGAGAA‑TTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgctttcgctcgaatcgaaccttagtcga                       >  1:1424131‑M1/1‑58 (MQ=255)

                                                tGCGGATTCGTTTGAGAA‑TTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgctttcgctcgaatcgaaccttagtcga                       >  1:1178430‑M1/1‑58 (MQ=255)

                                                tGCGGATTCG‑TTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgctttcgctcgaatcgaaccttagtcga                       >  2:878625‑M1/1‑58 (MQ=255)

                                                  cGGATTCGTTTGAGAA‑TTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgctttcgctcgaatcgaaccttagtcgaag                     >  1:719963‑M1/1‑56 (MQ=255)

                                                  cGGATTCG‑TTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgctttcgctcgaatcgaaccttagtcgaag                     >  2:1279361‑M1/1‑56 (MQ=255)

                                                            ttgagaattccggggcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgctttcgctcgaatcgaaccttagtcgaaggttctcacc            <  2:1431650‑M1/133‑94 (MQ=255)

                                                            ttgagaattccggggcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgctttcgctcgaatcgaaccttagtcgaaggttctcacc            <  2:610105‑M1/133‑94 (MQ=255)

                                                            ttgagaattccggggcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgctttcgctcgaatcgaaccttagtcgaaggttctcacc            <  2:788845‑M1/133‑94 (MQ=255)

                                                                     ccggggctTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgctttcgctcgaatcgaaccttagtcgaaggttctcacccttccccga   <  2:703340‑M1/138‑103 (MQ=255)

                                                                      cggggcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgctttcgctcgaatcgaaccttagtcgaaggttctcacccttccccgat  <  1:872246‑M1/139‑104 (MQ=255)

                                                                      cggggcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTattcgtcgcttcgctcctcacccttcgggccgttgcctgtggcaacgttctctcgctttcgctcgaatcgaaccttagtcgaaggttctcacccttccccgat  <  1:198079‑M1/139‑104 (MQ=255)

CCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCG‑TTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTAATGCTTGAGATGG  >  NC_000913/1287157‑1287365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`