BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,394,384	C→A	L107M (CTG→ATG)	nnr →	NAD(P)HX epimerase/NAD(P)HX dehydratase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,394,384	0	C	A	100.0%	419.5 / NA	119	L107M (CTG→ATG)	nnr	NAD(P)HX epimerase/NAD(P)HX dehydratase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (49/70); total (49/70)

Only 100 of 128 total aligned reads displayed.

GCCACTGGCTGGTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGCTGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGCAAGCGCCCCGCGAATCCATTAGCCA  >  NC_000913/4394247‑4394520

     tggctggTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGTATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCAcg                                                                                                                                   <  2:1419368/140‑1 (MQ=255)

     tggctggTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCAcg                                                                                                                                   <  2:453918/140‑1 (MQ=255)

      ggctggTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCAcgc                                                                                                                                  <  2:1161161/140‑1 (MQ=255)

       gctggTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCAcgcg                                                                                                                                 <  1:1972110/140‑1 (MQ=255)

       gctggTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCAcgcg                                                                                                                                 <  2:1871309/140‑1 (MQ=255)

       gctggTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCAcgcg                                                                                                                                 <  2:1559822/140‑1 (MQ=255)

       gctggTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGGGGGCGCGCGACTGGCCAAAGCGGGCGGCATTGAGGGCACGTTGTTGGCCCCGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCAcgcg                                                                                                                                 >  2:1837725/1‑140 (MQ=255)

           gTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGc                                                                                                                             <  2:130778/140‑1 (MQ=255)

            tGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCa                                                                                                                            >  1:2207281/1‑140 (MQ=255)

                 tgCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGtt                                                                                                                       >  2:926596/1‑140 (MQ=255)

                 tgCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGtt                                                                                                                       >  2:693688/1‑140 (MQ=255)

                 tgCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGtt                                                                                                                       >  1:1896180/1‑140 (MQ=255)

                 tgCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGtt                                                                                                                       >  1:1543412/1‑140 (MQ=255)

                 tgCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGtt                                                                                                                       >  1:1788562/1‑140 (MQ=255)

                 tgCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGGCGCGCGACTGGCCAAAGCGGTCGGCATTTAGGTCACGGTTTTGGGCCAGGAGAGCGACAAACCGATGCCGGAAGAGGGCGCGAGGGCACGCGAAGCATGGtt                                                                                                                       >  2:1685695/1‑140 (MQ=255)

                 tgCGGTCATGGTAATAACGGCGGCGAAGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGtt                                                                                                                       >  2:557174/1‑140 (MQ=255)

                  gCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTa                                                                                                                      <  1:1293042/140‑1 (MQ=255)

                      tCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAAcg                                                                                                                  >  2:1411686/1‑140 (MQ=255)

                       cATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAAcgc                                                                                                                 <  2:1087135/140‑1 (MQ=255)

                        aTGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAAcgcg                                                                                                                >  1:2247087/1‑140 (MQ=255)

                        aTGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAAcgcg                                                                                                                >  2:81750/1‑140 (MQ=255)

                         tGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCgg                                                                                                               <  2:1543412/140‑1 (MQ=255)

                           gTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGt                                                                                                             <  1:636244/140‑1 (MQ=255)

                           gTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCCCGATGGCACGCGAAGCATGGGTAAACGCgggg                                                                                                             >  1:1234346/1‑139 (MQ=255)

                             aataaCGGCGGCGGTGGCCACGTGGTCGCGCGACTGGCCAAAACGGGCGGCATTGAGGGCACGTTGTTGGGCCCGGAGAGCGGCAAAACGTTGCCGGAAGAGGCCGCGGTGGGACGCGAAGCATGGGTAAAAGCgggggg                                                                                                           >  2:1152799/1‑140 (MQ=255)

                              ctgctggcggcGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGc                                                                                                          <  2:974553/135‑1 (MQ=255)

                              ataaCGGCGGCGATGGCTACGTGGGCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGc                                                                                                          <  1:2051207/140‑1 (MQ=255)

                               taaCGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCTCGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCg                                                                                                         <  2:1872419/140‑1 (MQ=255)

                                  cggcggCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCgaga                                                                                                      >  1:1942442/1‑140 (MQ=255)

                                    gcggcgATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATc                                                                                                    >  1:1784024/1‑140 (MQ=255)

                                    gcggcgATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGGTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGGGGCGAGATc                                                                                                    >  2:1024331/1‑140 (MQ=255)

                                     cggcgATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATcc                                                                                                   >  1:2326771/1‑140 (MQ=255)

                                     cggcgATGGCTACGAGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATcc                                                                                                   >  1:510916/1‑140 (MQ=255)

                                      ggcgATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCa                                                                                                  <  1:1232842/140‑1 (MQ=255)

                                       gcgATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCAt                                                                                                 >  2:856775/1‑140 (MQ=255)

                                         gATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGc                                                                                               <  2:1763397/140‑1 (MQ=255)

                                           tGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCtt                                                                                             <  2:2295174/140‑1 (MQ=255)

                                           tGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCtt                                                                                             <  2:1788562/140‑1 (MQ=255)

                                           tGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCtt                                                                                             <  1:960412/140‑1 (MQ=255)

                                           tGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCtt                                                                                             <  1:1685695/140‑1 (MQ=255)

                                           tGGCTACGGGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCtt                                                                                             <  2:954116/140‑1 (MQ=255)

                                                  gTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAatat                                                                                      >  1:324281/1‑140 (MQ=255)

                                                     gTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGt                                                                                   <  1:1229638/140‑1 (MQ=255)

                                                     gTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGt                                                                                   >  1:367167/1‑140 (MQ=255)

                                                     gTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGt                                                                                   <  1:880906/140‑1 (MQ=255)

                                                     gTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGt                                                                                   <  1:2375523/140‑1 (MQ=255)

                                                       cgcgcgACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCt                                                                                 >  1:885989/1‑140 (MQ=255)

                                                       cgcgcgACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCt                                                                                 >  1:1460488/1‑140 (MQ=255)

                                                           cgACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGc                                                                                               <  1:2340715/122‑1 (MQ=255)

                                                           cgACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGc                                                                                               >  2:2340715/1‑122 (MQ=255)

                                                           cgACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTCTCTGGcc                                                                             <  2:510916/140‑1 (MQ=255)

                                                              cTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGa                                                                          <  1:1297177/140‑1 (MQ=255)

                                                              cTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGa                                                                          <  1:1411686/140‑1 (MQ=255)

                                                              cTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGa                                                                          <  2:1516584/140‑1 (MQ=255)

                                                              cTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGa                                                                          <  1:1950878/140‑1 (MQ=255)

                                                              cTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGa                                                                          <  2:1932208/140‑1 (MQ=255)

                                                              cTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGa                                                                          <  2:1981943/140‑1 (MQ=255)

                                                               tGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGaa                                                                         >  1:125962/1‑140 (MQ=255)

                                                               tGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGaa                                                                         <  2:2207281/140‑1 (MQ=255)

                                                                ggCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAAt                                                                        <  2:1784024/140‑1 (MQ=255)

                                                                   cAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATAGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCgg                                                                     <  2:2229250/140‑1 (MQ=255)

                                                                    aaaGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGt                                                                    <  1:557174/140‑1 (MQ=255)

                                                                        cGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGAt                                                                <  2:1317160/140‑1 (MQ=255)

                                                                        cGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGAt                                                                <  2:1619083/140‑1 (MQ=255)

                                                                        cGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGAt                                                                <  1:1713630/140‑1 (MQ=255)

                                                                           tCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCt                                                              <  2:222197/139‑1 (MQ=255)

                                                                           tCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCt                                                              >  1:222197/1‑139 (MQ=255)

                                                                           tCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTg                                                             >  1:2013091/1‑140 (MQ=255)

                                                                                       tCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATgcg                                                 <  2:1886780/140‑1 (MQ=255)

                                                                                       tCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATgcg                                                 <  2:1460488/140‑1 (MQ=255)

                                                                                       tCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATgcg                                                 <  2:367167/140‑1 (MQ=255)

                                                                                       tCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATgcg                                                 <  1:563382/140‑1 (MQ=255)

                                                                                         aCGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCgct                                               >  1:1396723/1‑140 (MQ=255)

                                                                                            ttgttgGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCgctgct                                            <  2:565646/140‑1 (MQ=255)

                                                                                            ttgttgGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCgctgct                                            <  1:170237/140‑1 (MQ=255)

                                                                                            ttgttgGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCgctgct                                            <  1:856775/140‑1 (MQ=255)

                                                                                              gttgGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATgcgc                                                <  1:2289988/134‑1 (MQ=255)

                                                                                              gttgGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATgcgc                                                >  2:2289988/1‑134 (MQ=255)

                                                                                                 ggCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTa                                       <  2:324281/140‑1 (MQ=255)

                                                                                                       ggAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGtt                                 >  1:860924/1‑140 (MQ=255)

                                                                                                         agagCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTg                               >  2:2161271/1‑140 (MQ=255)

                                                                                                         agagCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTg                               >  2:1238337/1‑140 (MQ=255)

                                                                                                           agCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCgctgct                                            <  1:166426/125‑1 (MQ=255)

                                                                                                           agCGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCgctgct                                            >  2:166426/1‑125 (MQ=255)

                                                                                                             tgACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGc                           >  2:1976748/2‑140 (MQ=255)

                                                                                                             cgccAAACTGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGGGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGc                           >  2:1062824/4‑140 (MQ=255)

                                                                                                             cGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGc                           >  1:953619/1‑140 (MQ=255)

                                                                                                             cGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGc                           >  1:2060391/1‑140 (MQ=255)

                                                                                                             cGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGc                           >  1:58491/1‑140 (MQ=255)

                                                                                                             cGACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGc                           >  2:1603178/1‑140 (MQ=255)

                                                                                                              gACAAACCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGCa                          <  1:1837725/140‑1 (MQ=255)

                                                                                                                  aaCCGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGCAAgcg                      <  2:1896180/140‑1 (MQ=255)

                                                                                                                     cGTTGCCGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGCAAGCGccc                   <  1:418395/140‑1 (MQ=255)

                                                                                                                          ccGGAAGAGGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGCAAGCGCCCCGCGa              <  2:125962/140‑1 (MQ=255)

                                                                                                                               agagGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGCAAGCGCCCCGCGAATCCa         <  2:225198/140‑1 (MQ=255)

                                                                                                                                 agGCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGCAAGCGCCCCGCGAATCCAtt       <  1:693688/140‑1 (MQ=255)

                                                                                                                                  ggCCGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGCAAGCGCCCCGCGAATCCATTa      >  2:611960/1‑140 (MQ=255)

                                                                                                                                    ccGCGATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGCAAGCGCCCCGCGAATCCATTAGc    >  1:547555/1‑140 (MQ=255)

                                                                                                                                     cgcgATGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGCAAGCGCCCCGCGAATCCATTAGcc   <  1:1475532/140‑1 (MQ=255)

                                                                                                                                      gcgaTGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGCAAGCGCCCCGCGAATCCATTAGCCa  <  1:2161271/140‑1 (MQ=255)

GCCACTGGCTGGTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGCTGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGATCCATGCTTCGAATATTGTCTGGCCCGAATCGGTAGATCTGATTGTTGATGCGCTGCTCGGTACCGGTTTGCGGCAAGCGCCCCGCGAATCCATTAGCCA  >  NC_000913/4394247‑4394520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`