| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,515,609 | C→A | intergenic (+166/+34) | insL‑3 → / ← pdeA | putative IS186/IS421 transposase/putative c‑di‑GMP phosphodiesterase PdeA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,515,609 | 0 | C | A | 100.0% | 17.1 / NA | 7 | intergenic (+166/+34) | insL‑3/pdeA | putative IS186/IS421 transposase/putative c‑di‑GMP phosphodiesterase PdeA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (3/4); total (3/4) | |||||||||||
CAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCG > NC_000913/2515484‑2515700 | cacgTGGCCATTCGTGCCTCAGTATCCCGAACAGCCTCCAAAACGTAAATGAAGATCCCGAGGCATACGCCTAACGAGGCACCGAGGCGTCGCATTCTTCAGTTGGTTCAACCCTTAAGCTAGCGATTAGGGGATAATTc > 2:216071/4‑140 (MQ=2)cAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTCCAGATGGTTCAACCCTTAAGTTAGCGATTATGGGATAATTc > 1:303622/1‑140 (MQ=18) gTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGATTATGGGATAATTCCCCGGTTTTTTTa < 2:203626/140‑1 (MQ=255) tCCCTGACAGCCTACAAAACGCAATTGAAGACCGCGAGGCATCGCCTTACCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGATTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAAt < 2:285580/140‑1 (MQ=255) cAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGATTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGAc < 1:121830/140‑1 (MQ=255) ttGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGATTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCaa < 1:25228/140‑1 (MQ=255) cgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGATTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAccc > 1:60706/1‑140 (MQ=255) cgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGATTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAccc > 2:141193/1‑140 (MQ=255) ggCACCGTGGCGCCGCATTCTTCAGATGGCTCAACCCTTAAGTTAGCGATTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCg > 2:249384/1‑140 (MQ=255) | CAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCG > NC_000913/2515484‑2515700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |