| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3588442 = | 34 (0.810) | 3 (0.080) | 3/260 | 4.2 | 7.9% | coding (739/1071 nt) | ugpC | sn‑glycerol 3‑phosphate ABC transporter ATP binding subunit |
| ? | NC_000913 | 3589209 = | 38 (0.970) | coding (819/846 nt) | ugpE | sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpE | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTGGTGTGCCAATCTGTTCGGCAACACCGCCGTTCATCACCATTACTCGCTGGGCGAGC > NC_000913/3588303‑3588581 | ccTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCAc > 2:358518/1‑140 (MQ=255) ttCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCAcg < 2:624371/139‑1 (MQ=255) ttCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCAcg > 1:624371/1‑139 (MQ=255) tgcctgcGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGc < 1:358518/140‑1 (MQ=255) cctgcGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCt < 2:194922/140‑1 (MQ=255) gcGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTc > 2:178440/1‑140 (MQ=255) ttAGCGCAATATGTTCCGGGCGAACGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAgg < 1:61707/140‑1 (MQ=255) gCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGa > 1:165977/1‑140 (MQ=255) gCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGa > 1:234972/1‑140 (MQ=255) aaTGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATaa > 1:587505/1‑140 (MQ=255) gCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAAc < 2:165977/140‑1 (MQ=255) agagTCATTTTACGCCCGGCATACTGACGGTTGCCTCCGTTGAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCTTTCGTTATTCCCGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGc < 2:325833/140‑1 (MQ=255) agTCATTTTACGCCCGGCATACTGACGGTAGACACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTa > 1:539394/1‑140 (MQ=255) tCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACa > 1:522637/1‑140 (MQ=255) aTTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACaaa > 2:388372/1‑140 (MQ=255) tACGCGCGGCATACTGACGGCAGCCGCAGTTTAGCGGCAGCTCAATGCCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCGCGCGGCCTGTCAGCAGGTCCAGCGCCGGACTGCCGATAAAACTCGCTACAAACAgg < 2:669818/140‑1 (MQ=255) ggTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAg < 1:414779/140‑1 (MQ=255) gTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGa > 1:185784/1‑140 (MQ=255) ccACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTc > 1:672624/1‑140 (MQ=255) ccGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAAc > 2:314248/1‑140 (MQ=255) gCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTGGTGTGCCa < 2:587505/140‑1 (MQ=255) cAGCTCAATACCGCCGTCCCGGTCGAAATGCGGGCCTTCGTTATTCACGCCGCCTGTCAGCAGGTTCGTCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTGGTCTGCCaa > 2:298404/1‑140 (MQ=255) cTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTg < 1:582299/128‑1 (MQ=255) cTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTg > 2:582299/1‑128 (MQ=255) tCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTGGTGTGCCAATCTg < 2:539394/140‑1 (MQ=255) ccgTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTGGTGTGCCAATCTGTTCGGCAac > 1:93428/1‑140 (MQ=255) ccgTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTGGTGTGCCAATCTGTTCGGCAac > 1:384384/1‑140 (MQ=255) ccgTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTGGTGTGCCAATCTGTTCGGCAac > 2:668636/1‑140 (MQ=255) tCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTGGTGTGCCAATCTGTTCGGCAACAcc > 1:114213/1‑140 (MQ=255) aGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTGGTGTGCCAATCTGTTCGGCAACAccgcc < 2:6350/140‑1 (MQ=255) gCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTGGTGTGCCAATCTGTTCGGCAACACCGCCGTTCATCACCATTa < 1:388372/140‑1 (MQ=255) cGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTGGTGTGCCAATCTGTTCGGCAACACCGCCGTTCATCACCATTACTCGc > 1:663511/1‑140 (MQ=255) gTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTGGTGTGCCAATCTGTTCGGCAACACCGCCGTTCATCACCATTACTCGCt > 2:337411/1‑140 (MQ=255) tCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTGGTGTGCCAATCTGTTCGGCAACACCGCCGTTCATCACCATTACTCGCTGGGCg < 1:314248/140‑1 (MQ=255) cgcgGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTGGTGTGCCAATCTGTTCGGCAACACCGCCGTTCATCACCATTACTCGCTGGGCGAGc > 1:685756/1‑140 (MQ=255) | CCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCGTAGACTTCAACTGGTGTGCCAATCTGTTCGGCAACACCGCCGTTCATCACCATTACTCGCTGGGCGAGC > NC_000913/3588303‑3588581 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |