Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,028,608 C→A W55C (TGG→TGT fadA ← 3‑ketoacyl‑CoA thiolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,028,6080CA100.0% 209.7 / NA 60W55C (TGG→TGTfadA3‑ketoacyl‑CoA thiolase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (45/15);  total (45/15)

GCGTCATGCAGTGCCTGCATGGATGAACCACACAAGCGATTAACGGTAACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGG  >  NC_000913/4028471‑4028738
                                                                                                                                         |                                                                                                                                  
gcGTCATGCAGTGCCTGCATGGATGAACCACACAAGCGATTAACGGTAACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACcaca                                                                                                                                  >  1:217305/1‑140 (MQ=255)
 cGTCATGCAGTGCCTGCATGGATGAACCACACAAGCGATTAACGGTAACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAg                                                                                                                                 >  1:95734/1‑140 (MQ=255)
           tGCCTGCATGGATGAACCACACAAGCGATTAACGGTACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATAtcgtc                                                                                                                      >  1:215913/1‑140 (MQ=255)
             ccTGCATGGATGAACCACACAAGCGATTAACGGTAACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATAtcgtcg                                                                                                                     >  1:687978/1‑140 (MQ=255)
                     gATGAACCACACAAGCGATTAACGGTAACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGgccgc                                                                                                             >  2:183887/1‑140 (MQ=255)
                           ccACACAAGCGATTAACGGTAACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTc                                                                                                       >  1:419856/1‑140 (MQ=255)
                            cacacaAGCGATTAACGGTAACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTcc                                                                                                      >  1:131646/1‑140 (MQ=255)
                                  aGCGATTAACGGTAACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGcc                                                                                                >  1:591081/1‑140 (MQ=255)
                                   gCGATTAACGGTAACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCg                                                                                               >  2:189073/1‑140 (MQ=255)
                                      aTTAACGGTAACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGt                                                                                            >  2:409618/1‑140 (MQ=255)
                                      aTTAACGGTAACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGt                                                                                            >  1:457694/1‑140 (MQ=255)
                                        tAACGGTAACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTa                                                                                          >  1:542620/1‑140 (MQ=255)
                                        tAACGGTAACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTa                                                                                          >  1:273212/1‑140 (MQ=255)
                                         aaCGGTAACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTAc                                                                                         >  2:604834/1‑140 (MQ=255)
                                                 ccgccgGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCcagc                                                                                 >  1:679038/1‑140 (MQ=255)
                                                     cgGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGc                                                                             <  2:591081/140‑1 (MQ=255)
                                                     cgGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGc                                                                             <  2:542620/140‑1 (MQ=255)
                                                      gggACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCt                                                                            <  1:409618/140‑1 (MQ=255)
                                                       ggACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTa                                                                           <  2:419856/140‑1 (MQ=255)
                                                                 tgGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAAt                                                                 >  2:317541/1‑140 (MQ=255)
                                                                 tgGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAAt                                                                 <  2:687978/140‑1 (MQ=255)
                                                                 tgGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAAt                                                                 >  2:633305/1‑140 (MQ=255)
                                                                   gTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCTGCAGGCTACGCATTAAATGa                                                               <  1:166982/140‑1 (MQ=255)
                                                                   gTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGa                                                               <  1:462405/140‑1 (MQ=255)
                                                                    tACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAg                                                              <  2:457694/140‑1 (MQ=255)
                                                                      cTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCg                                                            >  2:582916/1‑140 (MQ=255)
                                                                       ttCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTa                                                                           <  2:63148/124‑1 (MQ=255)
                                                                       ttCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTa                                                                           >  1:63148/1‑124 (MQ=255)
                                                                         cTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTa                                                                           >  1:395804/1‑122 (MQ=255)
                                                                         cTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTa                                                                           <  2:395804/122‑1 (MQ=255)
                                                                         cTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgag                                                         >  2:141226/1‑140 (MQ=255)
                                                                         cTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgag                                                         >  2:142493/1‑140 (MQ=255)
                                                                         cTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGga                                                          <  2:425380/139‑1 (MQ=255)
                                                                         cTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGga                                                          >  1:425380/1‑139 (MQ=255)
                                                                           gCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgagag                                                       >  1:516788/1‑140 (MQ=255)
                                                                           gCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCCACGCATTAAATGAGCGgagag                                                       <  2:585264/140‑1 (MQ=255)
                                                                              agcagcGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtc                                                    >  1:377551/1‑140 (MQ=255)
                                                                              agcagcGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtc                                                    >  2:436/1‑140 (MQ=255)
                                                                              agcagcGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtc                                                    >  1:169015/1‑140 (MQ=255)
                                                                                   cgccgcGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTg                                               >  2:108844/1‑140 (MQ=255)
                                                                                   cgccgcGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTg                                               >  1:547245/1‑140 (MQ=255)
                                                                                          ttACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgcacgcac                                        >  2:645022/1‑140 (MQ=255)
                                                                                           tACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGcacgcacg                                       <  1:138907/140‑1 (MQ=255)
                                                                                             cGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGtt                                     >  2:202125/1‑140 (MQ=255)
                                                                                                  gATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGaa                                <  1:105476/140‑1 (MQ=255)
                                                                                                     atTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAg                             >  1:598298/1‑140 (MQ=255)
                                                                                                              cTGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCt                    >  1:252742/1‑140 (MQ=255)
                                                                                                               tGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGGGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCtt                   >  1:439402/1‑140 (MQ=255)
                                                                                                               tGCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCtt                   >  2:674918/1‑140 (MQ=255)
                                                                                                                gCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTc                  >  2:91139/1‑140 (MQ=255)
                                                                                                                gCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTc                  >  1:706705/1‑140 (MQ=255)
                                                                                                                gCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTc                  >  2:595034/1‑140 (MQ=255)
                                                                                                                gCTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACACACGTTACGAAAAGCACCGCCCTTc                  >  2:517259/1‑140 (MQ=255)
                                                                                                                 cTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCg                 >  2:403602/1‑140 (MQ=255)
                                                                                                                 cTCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCg                 >  2:26592/1‑140 (MQ=255)
                                                                                                                  tCCAGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGGGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGa                <  2:439402/140‑1 (MQ=255)
                                                                                                                     aGCGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACACACGTTACGAAAAGCACCGCCCTTCGAACg             <  1:517259/140‑1 (MQ=255)
                                                                                                                      gcagacgctgcACACAACCACAGTAAATATCGTCGAGGGTCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACgg            >  1:408026/7‑140 (MQ=255)
                                                                                                                       cGTCTGCTGCACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGc           >  2:342996/1‑140 (MQ=255)
                                                                                                                           tgctgcACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAt       >  1:580628/1‑140 (MQ=255)
                                                                                                                           tgctgcACACAACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAt       >  1:594755/1‑140 (MQ=255)
                                                                                                                                cacacaACCACAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCgggg  >  2:571267/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                  
GCGTCATGCAGTGCCTGCATGGATGAACCACACAAGCGATTAACGGTAACCGCCGGGACAGAGTGTGGTACTTCTGCCAGCAGCGCCGCGTTACGGGCGATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGG  >  NC_000913/4028471‑4028738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: