New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	15387 =	NA (NA)	4 (0.140)	3/226	3.3	26.7%	noncoding (1/1345 nt)	IS186	repeat region
	?	NC_000913	16732 =	11 (0.380)					intergenic (+175/+19)	insL‑1/hokC	IS186/IS421 transposase/protein HokC
Rejected: Coverage evenness skew score above cutoff.

CAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATG  >  NC_000913/16598‑16865                                                                                                                                       |                                                                                                                                      cAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTc                                                                                                                                  >  1:259282/1‑140 (MQ=33)             ggTGGGACAGTACCCCTGACAGCCTAAAAAACGAAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCACCCCTTAAGTTAGCGCTTATGGGATCCCCCCCCGCCGTTGct                                                                                                                      <  2:64376/139‑1 (MQ=14)                       tATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCTTCGTCTTAACGAGGCCCCGAGGCGTCGCATTCTCCAGATGGTTCACCCCTTAGGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGa                                                                                                            <  2:337558/140‑1 (MQ=17)                            cTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCCCTCCCCGCCGTTGCTCTTACTCGGATTCGt                                                                                                       <  1:409548/140‑1 (MQ=255)                            cTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGt                                                                                                       >  1:118861/1‑140 (MQ=255)                                 aGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGcc                                                                                                  >  2:541113/1‑140 (MQ=255)                                           aCGCAATGGAAGAACGCGAGGCATCGTTTTAAGGGGCCCCCGTGGCGTCGCATTCTTCAGTGGGTTCACCCCTTAATTAAGCGCTTAGGGGATCCCCCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAg                                                                                        <  2:535566/140‑1 (MQ=18)                                                                         aaCGAGGCACCGAGGGGTCGCATTCTTCGGATGGTTCACCCTTTAAGTTAGCGTTTATGGGATCCCTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGaa                                                          <  2:118861/140‑1 (MQ=255)                                                                                     aGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGt                                              >  1:126431/1‑140 (MQ=255)                                                                                         gTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCttt                                          >  2:595691/1‑140 (MQ=255)                                                                                          tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCtttt                                         >  1:346172/1‑140 (MQ=255)                                                                                                                cccTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTa                   >  1:445122/1‑140 (MQ=255)                                                                                                                     aaGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTAcggcg              >  1:86230/1‑140 (MQ=255)                                                                                                                     aaGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTAcggcg              >  2:80008/1‑140 (MQ=255)                                                                                                                           gcgcTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATa        >  1:503971/1‑140 (MQ=255)                                                                                                                                 aTGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGCGGTACAGATg  >  1:144754/1‑140 (MQ=255)                                                                                                                                       |                                                                                                                                      CAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATG  >  NC_000913/16598‑16865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.