BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,705,169	A→C	intergenic (+5/‑81)	cnu → / → ydgK	H‑NS‑ and StpA‑binding protein/conserved inner membrane protein YdgK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,705,169	0	A	C	100.0%	398.8 / NA	102	intergenic (+5/‑81)	cnu/ydgK	H‑NS‑ and StpA‑binding protein/conserved inner membrane protein YdgK
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (49/53); total (49/53)

Only 100 of 108 total aligned reads displayed.

CACCCTGACGGACGATCAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCACCACAACGCCACAACGTATTGGAGGCTGGTTGCTTGGCCCGTTGGCCT  >  NC_000913/1705032‑1705304

cacCCTGACGGACGATCAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGt                                                                                                                                       >  1:1015616/1‑140 (MQ=255)

 acCCTGACGGACGATCAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTa                                                                                                                                      >  1:234143/1‑140 (MQ=255)

    cTGACGGACGATCAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCg                                                                                                                                   <  2:822385/140‑1 (MQ=255)

     tGACGGACGATCAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGa                                                                                                                                  >  1:765454/1‑140 (MQ=255)

     tGACGGACGATCAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGa                                                                                                                                  >  1:948889/1‑140 (MQ=255)

      gacggacgATCAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGAt                                                                                                                                 <  1:1191960/140‑1 (MQ=255)

      gacggacgATCAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGAt                                                                                                                                 <  2:985348/140‑1 (MQ=255)

       tcggccgATGAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGCCCCGCACAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGATTAGACGTTCGTCTGGTGCTGTGTATCATAAAAAACGTAGGGATc                                                                                                                                >  2:1113963/2‑140 (MQ=255)

        cggacgATCAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCg                                                                                                                               <  2:432778/140‑1 (MQ=255)

        cggacgATCAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCg                                                                                                                               <  1:1020136/140‑1 (MQ=255)

             gATCAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGa                                                                                                                                  >  2:446165/1‑132 (MQ=255)

             gATCAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGa                                                                                                                                  <  1:446165/132‑1 (MQ=255)

                cAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATaaa                                                                                                                       <  1:1113963/140‑1 (MQ=255)

                cAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATaaa                                                                                                                       <  2:365674/140‑1 (MQ=255)

                cAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATaaa                                                                                                                       <  2:6592/140‑1 (MQ=255)

                cAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATaaa                                                                                                                       <  2:876462/140‑1 (MQ=255)

                cAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATaaa                                                                                                                       <  1:791021/140‑1 (MQ=255)

                cAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATaaa                                                                                                                       <  1:338361/140‑1 (MQ=255)

                         aTCAATATGTATCGTGCTGCCGCTCACCGTCGCGCAGAGCTGGCTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCt                                                                                                                  >  2:765495/1‑136 (MQ=255)

                         aTCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCt                                                                                                                  <  1:765495/136‑1 (MQ=255)

                         aTCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTtata                                                                                                              >  2:980892/1‑140 (MQ=255)

                         aTCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTtata                                                                                                              >  2:409508/1‑140 (MQ=255)

                         aTCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTtata                                                                                                              >  2:188611/1‑140 (MQ=255)

                         aTCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTtata                                                                                                              >  2:258635/1‑140 (MQ=255)

                         aTCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTtata                                                                                                              >  2:1189722/1‑140 (MQ=255)

                         aTCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGGTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTtata                                                                                                              >  1:286912/1‑140 (MQ=255)

                             atatGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATaaa                                                                                                                       <  2:547459/127‑1 (MQ=255)

                             atatGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATaaa                                                                                                                       >  1:547459/1‑127 (MQ=255)

                             atatGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTAtaataa                                                                                                          >  1:34753/1‑140 (MQ=255)

                                  tATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGccc                                                                                                     <  2:234143/140‑1 (MQ=255)

                                   aTCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGcccc                                                                                                    >  2:554252/1‑140 (MQ=255)

                                   aTCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGcccc                                                                                                    >  2:1224127/1‑140 (MQ=255)

                                    tCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGGCCGTCTGGCACTATGTCCAATAAAGAACGGAGCGAGCGGTTATAAAAGCCTTATAATAACGCCCCt                                                                                                   >  2:574248/1‑140 (MQ=255)

                                      gTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTaa                                                                                                 >  2:53023/1‑140 (MQ=255)

                                      gTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTaa                                                                                                 >  2:940384/1‑140 (MQ=255)

                                       tgctgcCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTaaa                                                                                                >  2:639835/1‑140 (MQ=255)

                                        gctgcCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTAtaataa                                                                                                          >  2:767246/1‑129 (MQ=255)

                                        gctgcCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTAtaataa                                                                                                          <  2:269202/129‑1 (MQ=255)

                                        gctgcCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTAtaataa                                                                                                          >  1:269202/1‑129 (MQ=255)

                                        gctgcCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTaaaa                                                                                               >  1:1192355/1‑140 (MQ=255)

                                        gctgcCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTaaaa                                                                                               >  1:1150779/1‑140 (MQ=255)

                                        gctgcCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTaaaa                                                                                               >  2:1132650/1‑140 (MQ=255)

                                         ctgcCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAAt                                                                                              >  2:823312/1‑140 (MQ=255)

                                            ccGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAg                                                                                           >  1:404954/1‑140 (MQ=255)

                                             cGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGa                                                                                          <  1:783328/140‑1 (MQ=255)

                                              gATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGAt                                                                                         <  1:475186/140‑1 (MQ=255)

                                              gATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGAt                                                                                         <  1:1191485/140‑1 (MQ=255)

                                                 cACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTg                                                                                      >  1:210393/1‑140 (MQ=255)

                                                      tCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGt                                                                                 >  2:381238/1‑140 (MQ=255)

                                                      tCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGCCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGt                                                                                 >  1:324325/1‑140 (MQ=255)

                                                       cgcgCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGtt                                                                                <  1:1132650/140‑1 (MQ=255)

                                                         cgcAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTg                                                                              >  2:597469/1‑140 (MQ=255)

                                                         cgcAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTg                                                                              >  1:1125095/1‑140 (MQ=255)

                                                         cgcAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTg                                                                              >  1:9301/1‑140 (MQ=255)

                                                              agCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCg                                                                         <  1:409508/140‑1 (MQ=255)

                                                              agCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCg                                                                         <  2:324325/140‑1 (MQ=255)

                                                              agCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCg                                                                         <  1:1189722/140‑1 (MQ=255)

                                                              agCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCg                                                                         <  2:221852/140‑1 (MQ=255)

                                                              agCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCg                                                                         <  2:210393/140‑1 (MQ=255)

                                                              agCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCg                                                                         <  2:765454/140‑1 (MQ=255)

                                                              agCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCg                                                                         <  1:996960/140‑1 (MQ=255)

                                                              agCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCg                                                                         <  2:9301/140‑1 (MQ=255)

                                                                cTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCt                                                                       >  2:322170/1‑140 (MQ=255)

                                                                  ggTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTAt                                                                     <  1:381238/140‑1 (MQ=255)

                                                                      tCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTg                                                                 <  2:34753/140‑1 (MQ=255)

                                                                        tGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGga                                                               <  2:1125095/140‑1 (MQ=255)

                                                                        tGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGga                                                               >  1:48934/1‑140 (MQ=255)

                                                                         ggcgggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGgag                                                              <  2:54454/140‑1 (MQ=255)

                                                                         ggcgggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGgag                                                              <  2:1150779/140‑1 (MQ=255)

                                                                         ggcgggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGgag                                                              <  2:36596/140‑1 (MQ=255)

                                                                         ggcgggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGgag                                                              <  2:1192355/140‑1 (MQ=255)

                                                                         ggcgggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGgag                                                              <  2:948889/140‑1 (MQ=255)

                                                                            gggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAAc                                                           <  1:597469/140‑1 (MQ=255)

                                                                             ggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAAcc                                                          >  1:815488/1‑140 (MQ=255)

                                                                              gcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCt                                                         <  1:1152835/140‑1 (MQ=255)

                                                                               cgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGga                                                               >  2:988829/1‑133 (MQ=255)

                                                                               cgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGga                                                               <  1:988829/133‑1 (MQ=255)

                                                                                gtttgtttGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTAt                                                       <  1:258635/140‑1 (MQ=255)

                                                                                 tttgtttgACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATg                                                      <  2:815488/140‑1 (MQ=255)

                                                                                   tgtttgACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGac                                                    <  2:1015616/140‑1 (MQ=255)

                                                                                   tgtttgACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGac                                                    <  1:639835/140‑1 (MQ=255)

                                                                                         aCCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACcaccac                                              <  1:188611/140‑1 (MQ=255)

                                                                                             cGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCAccacaacg                                          >  1:921179/1‑140 (MQ=255)

                                                                                               gCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCAccacaacgcc                                        >  1:832924/1‑140 (MQ=255)

                                                                                                ccAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCAccacaacgcca                                       <  2:48934/140‑1 (MQ=255)

                                                                                                   ggTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCAccacaacgccacaa                                    <  1:238901/140‑1 (MQ=255)

                                                                                                    gTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCAccacaacg                                          <  2:460461/133‑1 (MQ=255)

                                                                                                    gTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCAccacaacg                                          >  1:460461/1‑133 (MQ=255)

                                                                                                          aaGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCACCACAACGCCACAACGTATTg                             <  1:980892/140‑1 (MQ=255)

                                                                                                          aaGTCCGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCACCACAACGCCACAACGTATTg                             >  2:1120175/1‑140 (MQ=255)

                                                                                                              ccGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCACCACAACGCCACAACGTATTGGAgg                         >  1:582926/1‑140 (MQ=255)

                                                                                                              ccGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCACCACAACGCCACAACGTATTGGAgg                         >  2:881404/1‑140 (MQ=255)

                                                                                                              ccGTCTGGCACTATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCACCACAACGCCACAACGTATTGGAgg                         <  1:242276/140‑1 (MQ=255)

                                                                                                                         tATGTCCAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCACCACAACGCCACAACGTATTGGAGGCTGGTTGCTTg              <  2:921179/140‑1 (MQ=255)

                                                                                                                               cAATAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCACCACAACGCCACAACGTATTGGAGGCTGGTTGCTTGGCCCGt        >  1:1222123/1‑140 (MQ=255)

                                                                                                                                aaTAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCACCACAACGCCACAACGTATTGGAGGCTGGTTGc                 <  2:1006073/130‑1 (MQ=255)

                                                                                                                                aaTAAAGAACGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCACCACAACGCCACAACGTATTGGAGGCTGGTTGc                 >  1:1006073/1‑130 (MQ=255)

                                                                                                                                     agaacgTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCACCACAACGCCACAACGTATTGGAGGCTGGTTGCTTGGCCCGTTGGCCt  >  2:76005/1‑140 (MQ=255)

                                                                                                                                     agaacgTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCACCACAACGCCACAACGTATTGGAGGCTGGTTGCTTGGCCCGTTGGCCt  >  1:355518/1‑140 (MQ=255)

                                                                                                                                     agaacgTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCACCACAACGCCACAACGTATTGGAGGCTGGTTGCTTGGCCCGTTGGCCt  >  2:1051633/1‑140 (MQ=255)

CACCCTGACGGACGATCAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTATGACCACCACAACGCCACAACGTATTGGAGGCTGGTTGCTTGGCCCGTTGGCCT  >  NC_000913/1705032‑1705304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`