BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,704,690	G→T	intergenic (+14/‑259)	blr → / → cnu	beta‑lactam resistance protein/H‑NS‑ and StpA‑binding protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,704,690	0	G	T	100.0%	491.2 / NA	134	intergenic (+14/‑259)	blr/cnu	beta‑lactam resistance protein/H‑NS‑ and StpA‑binding protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (68/66); total (68/66)

Only 100 of 136 total aligned reads displayed.

AATCGTCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCAGAGCAGTTTTTCA  >  NC_000913/1704554‑1704824

aaTCGTCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAg                                                                                                                                     >  1:122083/1‑140 (MQ=255)

aaTCGTCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAg                                                                                                                                     >  2:184763/1‑140 (MQ=255)

 aTCGTCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGc                                                                                                                                    <  2:1230698/140‑1 (MQ=255)

     tCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACa                                                                                                                                >  1:449174/1‑140 (MQ=255)

     tCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACa                                                                                                                                <  1:543518/140‑1 (MQ=255)

     tCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACa                                                                                                                                >  1:682109/1‑140 (MQ=255)

     tCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACa                                                                                                                                >  1:776913/1‑140 (MQ=255)

     tCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACa                                                                                                                                <  1:225273/140‑1 (MQ=255)

     tCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACa                                                                                                                                >  2:1166832/1‑140 (MQ=255)

     tCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACa                                                                                                                                >  2:164353/1‑140 (MQ=255)

     tCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACa                                                                                                                                >  1:1015981/1‑140 (MQ=255)

       ttATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACAtg                                                                                                                              >  1:1230852/1‑140 (MQ=255)

         aTTGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACAtgct                                                                                                                            >  2:819323/1‑140 (MQ=255)

          ttGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACAtgctg                                                                                                                           >  1:182790/1‑140 (MQ=255)

                tAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTc                                                                                                                     >  2:1064750/1‑140 (MQ=255)

                    aGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACa                                                                                                                                >  1:421621/1‑125 (MQ=255)

                    aGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACa                                                                                                                                <  2:421621/125‑1 (MQ=255)

                      gTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTg                                                                                                               <  1:819323/140‑1 (MQ=255)

                       ttGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGc                                                                                                              <  2:249239/140‑1 (MQ=255)

                       ttGGATCGTTCTTGTCGATTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGc                                                                                                              <  2:804568/140‑1 (MQ=255)

                          gATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCTACATGCTGCCCGTCCGGGTGCATg                                                                                                           >  1:1260229/1‑140 (MQ=255)

                                tCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCa                                                                                                     >  1:210505/1‑140 (MQ=255)

                                tCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCa                                                                                                     >  1:1163247/1‑140 (MQ=255)

                                 cTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCAc                                                                                                    <  1:905716/140‑1 (MQ=255)

                                 cTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCAc                                                                                                    <  1:1194153/140‑1 (MQ=255)

                                      cGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTc                                                                                               <  2:1015981/140‑1 (MQ=255)

                                       gTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCg                                                                                              <  2:282469/140‑1 (MQ=255)

                                          tCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGCGTGCTTCGGTACAACCCAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGat                                                                                           >  2:1018840/1‑140 (MQ=255)

                                          tCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGat                                                                                           >  2:494946/1‑140 (MQ=255)

                                          tCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGat                                                                                           >  1:947072/1‑140 (MQ=255)

                                            aGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGatat                                                                                         >  2:296616/1‑140 (MQ=255)

                                               cATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTaa                                                                                      >  2:20159/1‑140 (MQ=255)

                                                 ttcttcTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAAc                                                                                    <  1:104440/140‑1 (MQ=255)

                                                   cttcttGGCGTGGCGAGTCACATTGACAACTATCAGC‑‑CCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAgg                                                                                <  1:1274686/140‑1 (MQ=255)

                                                    ttcttGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAg                                                                                 <  1:73528/140‑1 (MQ=255)

                                                     tcttGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAgg                                                                                <  1:1166832/140‑1 (MQ=255)

                                                      cttGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGa                                                                               <  1:466616/140‑1 (MQ=255)

                                                      cttGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGa                                                                               >  1:841394/1‑140 (MQ=255)

                                                      cttGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGa                                                                               >  1:708816/1‑140 (MQ=255)

                                                        tggcgtggcgAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAAt                                                                             >  1:683416/1‑140 (MQ=255)

                                                        tggcgtggcgAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAAt                                                                             >  2:377297/1‑140 (MQ=255)

                                                        tggcgtggcgAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAAt                                                                             >  1:820082/1‑140 (MQ=255)

                                                           cgtggcgAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATtta                                                                          <  2:841394/140‑1 (MQ=255)

                                                           cgtggcgAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATtta                                                                          <  2:1067137/140‑1 (MQ=255)

                                                              ggcgAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATttatta                                                                       >  2:569695/1‑140 (MQ=255)

                                                               gcgAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTtattat                                                                      >  2:510339/1‑140 (MQ=255)

                                                                cgAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGa                                                                               <  2:720167/130‑1 (MQ=255)

                                                                  aGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCtt                                                                   <  2:477872/140‑1 (MQ=255)

                                                                  aGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCtt                                                                   <  2:683416/140‑1 (MQ=255)

                                                                     cacaTTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGtt                                                                <  1:346070/140‑1 (MQ=255)

                                                                      acaTTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTc                                                               <  2:736295/140‑1 (MQ=255)

                                                                        aTTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGa                                                             <  1:248715/140‑1 (MQ=255)

                                                                        aTTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGa                                                             <  1:503016/140‑1 (MQ=255)

                                                                            aCAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGAtgtt                                                         >  2:678666/1‑140 (MQ=255)

                                                                                cTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGttgttg                                                     >  1:161164/1‑140 (MQ=255)

                                                                                  aTCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGt                                                   <  1:488019/140‑1 (MQ=255)

                                                                                  aTCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGt                                                   <  2:122083/140‑1 (MQ=255)

                                                                                  aTCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGt                                                   <  2:343841/140‑1 (MQ=255)

                                                                                   tCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTg                                                  <  1:184763/140‑1 (MQ=255)

                                                                                      gCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGAtt                                               >  1:610564/1‑140 (MQ=255)

                                                                                         aCCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTc                                            <  2:892622/140‑1 (MQ=255)

                                                                                         aCCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTc                                            <  1:323426/140‑1 (MQ=255)

                                                                                         aCCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTc                                            <  1:596048/140‑1 (MQ=255)

                                                                                         aCCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTc                                            <  2:132824/140‑1 (MQ=255)

                                                                                           cTGAACAGCGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAg                                          >  2:893608/1‑140 (MQ=255)

                                                                                                     tGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTc                                            <  2:1196801/128‑1 (MQ=255)

                                                                                                     tGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTc                                            >  1:1196801/1‑128 (MQ=255)

                                                                                                     tGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTaaa                                >  2:99137/1‑140 (MQ=255)

                                                                                                     tGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTaaa                                >  1:1132727/1‑140 (MQ=255)

                                                                                                     tGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTaaa                                >  1:1084666/1‑140 (MQ=255)

                                                                                                     tGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTaaa                                >  1:1031962/1‑140 (MQ=255)

                                                                                                     tGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTaaa                                >  2:1032901/1‑140 (MQ=255)

                                                                                                     tGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTaaa                                <  2:1084666/140‑1 (MQ=255)

                                                                                                     tGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTACATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTaaa                                <  1:950503/140‑1 (MQ=255)

                                                                                                      gCTTCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAg                               >  1:335128/1‑140 (MQ=255)

                                                                                                        ttCGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAgcg                             >  1:536316/1‑140 (MQ=255)

                                                                                                          cGGTACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGcgcg                           >  1:261162/1‑140 (MQ=255)

                                                                                                             tACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTa                        >  1:283261/1‑140 (MQ=255)

                                                                                                             tACAACACAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTa                        <  1:118588/140‑1 (MQ=255)

                                                                                                               caacaCAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTAct                      <  2:37397/140‑1 (MQ=255)

                                                                                                                 acacAAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTActct                    >  2:410678/1‑140 (MQ=255)

                                                                                                                  cacaAGTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCtt                   >  2:1151291/1‑140 (MQ=255)

                                                                                                                       gTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCag              >  2:473438/1‑140 (MQ=255)

                                                                                                                       gTAAGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCag              >  2:182125/1‑140 (MQ=255)

                                                                                                                         aaGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCagag            <  2:947072/140‑1 (MQ=255)

                                                                                                                         aaGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCagag            <  1:967838/140‑1 (MQ=255)

                                                                                                                          aGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCAGAGc           <  1:1013415/140‑1 (MQ=255)

                                                                                                                          aGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCAGAGc           <  2:474455/140‑1 (MQ=255)

                                                                                                                          aGCTCTGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCAGAGc           <  2:283261/140‑1 (MQ=255)

                                                                                                                            ctctGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCAGAGCAg         >  1:77841/1‑140 (MQ=255)

                                                                                                                            ctctGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCAGAGCAg         >  1:481616/1‑140 (MQ=255)

                                                                                                                            ctctGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCAGAGCAg         >  1:486173/1‑140 (MQ=255)

                                                                                                                            ctctGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCAGAGCAg         <  1:1183754/140‑1 (MQ=255)

                                                                                                                               tGCACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCAGAGCAGttt      >  1:187729/1‑140 (MQ=255)

                                                                                                                                 cACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCAGAGCAGttttt    >  2:599721/1‑140 (MQ=255)

                                                                                                                                 cACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCAGAGCAGttttt    <  2:449174/140‑1 (MQ=255)

                                                                                                                                 cACTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCAGAGCAGttttt    <  2:1237131/140‑1 (MQ=255)

                                                                                                                                   cTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAATCGCGTTACTCTTTTCAGAGCAGTTTTTCa  <  1:893608/140‑1 (MQ=255)

                                                                                                                                   cTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCAGAGCAGTTTTTCa  <  2:610564/140‑1 (MQ=255)

                                                                                                                                   cTTGTTGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCAGAGCAGTTTTTCa  <  2:289309/140‑1 (MQ=255)

AATCGTCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTCAGTCATTCTTCTTGGCGTGGCGAGTCACATTGACAACTATCAGCCACCTGAACAGAGTGCTTCGGTACAACACAAGTAAGCTCTGCACTTGTGGAGCGACATGCTGCCCGTCCGGGTGCATGTTTTCACTTGTCGGATATTAAACCAGGAATTTATTATCTTGTTCGATGTTGTTGGTGATTGTCAGGGATAGTAAAGCGCGTTACTCTTTTCAGAGCAGTTTTTCA  >  NC_000913/1704554‑1704824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`