Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 2,334,528 | G→A | G144G (GGC→GGT) | yfaT ← | DUF1175 domain‑containing protein YfaT |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,334,528 | 0 | G | A | 96.4% | 167.2 / ‑1.1 | 55 | G144G (GGC→GGT) | yfaT | DUF1175 domain‑containing protein YfaT |
Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (29/24); total (30/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.41e-01 |
GTATCCATCGGGTGTCCTTCCATGTCATAAGTTGTTGCAGACTGACTGCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCCCTGATTCCAGTTTT > NC_000913/2334395‑2334661 | gTATCCATCGGGTGTCCTTCCATGTCATAAGTTGTTGCAGACTGACTGCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGa > 1:174492/1‑140 (MQ=255) tCCATCGGGTGTCCTTCCATGTCATAAGTTGTTGCAGACTGACTGCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCg > 2:173245/1‑140 (MQ=255) tCGGGTGTCCTTCCATGTCATAAGTTGTTGCAGACTGACTGCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGaaaa > 1:32330/1‑140 (MQ=255) gggTGTCCTTCCATGTCATAAGTTGTTGCAGACTGACTGCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGaaaaaa > 2:784506/1‑140 (MQ=255) gtgtCCTTCCATGTCATAAGTTGTTGCAGACTGACTGCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAAt > 2:870046/1‑140 (MQ=255) tCCTTCCATGTCATAAGTTGTTGCAGACTGACTGCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCat > 1:318335/1‑140 (MQ=255) ccATGTCATAAGTTGTTGCAGACTGACTGCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGc > 2:508567/1‑140 (MQ=255) tGTCATAAGTTGTTGCAGACTGACTGCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAg > 1:592433/1‑140 (MQ=255) aTAAGTTGTTGCAGACTGACTGCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAg > 1:184157/1‑140 (MQ=255) aGTTGTTGCAGACTGACTGCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAgcgc < 2:174492/140‑1 (MQ=255) gCAGACTGACTGCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGttt < 1:870046/140‑1 (MQ=255) cAGACTGACTGCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTa > 1:282010/1‑140 (MQ=255) gactgactGCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATg > 1:407784/1‑140 (MQ=255) ctgactgCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTc < 2:318335/140‑1 (MQ=255) ctgactgCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTc < 1:718942/140‑1 (MQ=255) gactgCGCACATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCt < 2:373424/140‑1 (MQ=255) actgCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGtt > 1:171033/1‑131 (MQ=255) actgCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGtt < 2:171033/131‑1 (MQ=255) cgcgcATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCa < 1:862900/140‑1 (MQ=255) gcgcATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCaa < 2:288053/140‑1 (MQ=255) gcgcATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCaa < 1:578682/140‑1 (MQ=255) cATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATaa > 1:157773/1‑140 (MQ=255) tCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACt < 2:592433/140‑1 (MQ=255) cGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTgg < 2:590536/140‑1 (MQ=255) tGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCtg < 2:282010/140‑1 (MQ=255) tCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCtgtt > 2:114391/1‑140 (MQ=255) cAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACt < 2:97469/132‑1 (MQ=255) cAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACt > 1:97469/1‑132 (MQ=255) gTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGTCAATAAACTGGCTGTTGTa < 2:407784/140‑1 (MQ=255) gTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCGGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGGTTATGTCCTGGCCAATAAACTGGCTGTTGTa < 2:961881/140‑1 (MQ=255) tGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATc > 2:268753/1‑140 (MQ=255) gcTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAAt > 1:767020/1‑140 (MQ=255) gcTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAAt > 1:549051/1‑140 (MQ=255) tCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTaa > 2:134484/1‑140 (MQ=255) ccGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCATGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAAt < 1:49661/140‑1 (MQ=255) tgtgGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATcgcg < 2:184157/140‑1 (MQ=255) tgtgGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATcgcg < 2:32330/140‑1 (MQ=255) tAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTcac > 2:18931/1‑140 (MQ=255) aTGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATa < 1:395156/140‑1 (MQ=255) aTGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATa > 2:2398/1‑140 (MQ=255) aTGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATa > 1:948299/1‑140 (MQ=255) cGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATcgc > 1:560594/1‑127 (MQ=255) cGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATcgc < 2:560594/127‑1 (MQ=255) cGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAgggg < 1:173245/140‑1 (MQ=255) aaCGCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCg > 1:609672/1‑140 (MQ=255) gCCCCATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGtt > 1:138355/1‑140 (MQ=255) ccATCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTc < 2:948299/140‑1 (MQ=255) aTCCAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCACCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTccc > 2:328228/1‑140 (MQ=255) tCCAGACCATTAAGTGCTGGGCAGCACCCTGATCGAAAAAAACCATATCGCCACGCAGCGCCTGGCTTATGTCCTGTCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTTCCg > 2:160569/1‑140 (MQ=255) cAGACCATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGtt < 2:941684/140‑1 (MQ=255) cATTAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCCCt < 1:268753/140‑1 (MQ=255) cATGAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCCCt < 2:286787/140‑1 (MQ=255) tAAGTGCTGGGCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCCCTGAt > 1:561063/1‑140 (MQ=255) ggCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCCCTGATTCCAGtttt > 2:328804/1‑140 (MQ=255) ggCATCACCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCCCTGATTCCAGtttt > 1:165943/1‑140 (MQ=255) | GTATCCATCGGGTGTCCTTCCATGTCATAAGTTGTTGCAGACTGACTGCGCGCATTCCGTTGTCAGTTTTCGTGGCGCTTCCGGTGTGGTAGATGACGTAACGCCCCATCCAGACCATTAAGTGCTGGGCATCGCCCTGATCGAAAAAAATCATATCGCCAGGCAGCGCCTGGTTTATGTCCTGGCCAATAAACTGGCTGTTGTACTGAATCAAATTAATCGCGGTCACATAGGGGCCGGTTTTCCCGTTCCCCTGATTCCAGTTTT > NC_000913/2334395‑2334661 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |