mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 36.0% | 63.3 / 30.1 | 50 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 3,404,218 | 0 | T | G | 32.1% | 36.4 / 16.6 | 28 | G245G (GGT→GGG) | yhdH | acrylyl‑CoA reductase |
| * | NC_000913 | 3,404,215 | 0 | T | G | 26.7% | 48.7 / 13.8 | 30 | G244G (GGT→GGG) | yhdH | acrylyl‑CoA reductase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 25.6% | 73.1 / 21.6 | 39 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,326,450 | 0 | T | G | 24.3% | 67.7 / 18.8 | 37 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1979312 = | 16 (0.330) | 8 (0.170) | 5/270 | 4.2 | 33.3% | intergenic (‑97/‑441) | insA‑5/uspC | IS1 protein InsA/universal stress protein C |
| ? | NC_000913 | 2068941 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 4339130 | 42 (0.850) | 4 (0.080) | 4/274 | 4.6 | 7.9% | coding (1392/2268 nt) | adiA | arginine decarboxylase, degradative |
| ? | NC_000913 | 4339134 = | 51 (1.040) | coding (1388/2268 nt) | adiA | arginine decarboxylase, degradative | |||||
| * | ? | NC_000913 | = 4049438 | 70 (1.420) | 3 (0.060) | 3/266 | 5.0 | 4.0% | coding (2473/2787 nt) | polA | DNA polymerase I |
| ? | NC_000913 | 4049450 = | 75 (1.570) | coding (2485/2787 nt) | polA | DNA polymerase I | |||||